Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003669 (argH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003669 showshow history
Names
argH ECDH10B_4148
Product
argininosuccinate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4254570 4255943 1374 458
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009049 (IPR009049 Argininosuccinate lyase) Jul 2009
Automated Process Approved IPR003031 (IPR003031 (DEPRECATED) Delta crystallin) Jul 2009
Automated Process Approved IPR000362 (IPR000362 Fumarate lyase family) Jul 2009
Automated Process Approved IPR008948 (IPR008948 L-Aspartase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0042450 arginine biosynthetic process via ornithine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004056 argininosuccinate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012969
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4148 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product argininosuccinate lyase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003031 (DEPRECATED) Delta crystallin Protein Sequence Similarity - InterPro Domain: IPR003031
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009049 Argininosuccinate lyase Protein Sequence Similarity - InterPro Domain: IPR009049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000362 Fumarate lyase family Protein Sequence Similarity - InterPro Domain: IPR000362
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008948 L-Aspartase-like Protein Sequence Similarity - InterPro Domain: IPR008948
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012969 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012969
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0042450 arginine biosynthetic process via ornithine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004056 argininosuccinate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000361 argH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000460 argH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0174085 argH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000142 argH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001899 argH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007503 argH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004218 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007029 argH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004023 argH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010250 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009119 argH CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081117 argH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006438 argH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007589 argH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004546 argH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008933 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001206 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008750 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007263 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007454 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006874 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010252 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007834 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008067 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007612 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007694 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007239 argH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007189 argH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007135 argH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029122 argH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007830 argH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008879 argH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012969 argH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003395 argH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004340 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004402 argH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134988 argH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001801 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004560 argH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060395 argH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000124 argH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000054 argH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003751 argH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008528 argH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003711 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004710 argH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008769 argH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012950 argH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010010 argH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007422 argH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008807 argH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007765 argH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007724 argH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007417 argH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007919 argH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008803 argH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008708 argH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003999 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003958 argH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005129 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008948 argH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006631 argH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008397 argH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006989 argH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112914 argH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085225 argH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102716 argH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005037 argH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007774 argH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006009 argH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004335 argH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009862 argH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005764 argH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004287 argH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074936 argH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090250 argH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004282 argH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004497 argH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002373 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000381 argH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003213 argH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003372 argH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002680 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241758 argH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008020 argH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000123 argH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007727 argH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003462 argH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128514 argH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005944 argH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008786 argH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002633 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006032 argH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007154 argH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029906 argH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006839 argH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000055 argH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004248 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007431 argH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004056 argH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000119 argH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000133 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004854 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4249570 to 4260943
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003665ppcCDScomplement42481674250818Upstream
AEC-0003666argECDScomplement42514164252567Upstream
AEC-0003667argCCDSforward42527214253725Upstream
AEC-0003668argBCDSforward42537364254509Upstream
AEC-0003669argHCDSforward42545704255943Matches
AEC-0004287oxySncRNAcomplement42560054256114Downstream
AEC-0003670oxyRCDSforward42562104257127Downstream
AEC-0003671sthACDScomplement42571104258510Downstream
AEC-0003672fabRCDSforward42588444259491Downstream
AEC-0003673yijDCDSforward42594914259850Downstream
AEC-0003674trmACDScomplement42598904260990Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948