Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003671 (sthA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003671 showshow history
Names
sthA ECDH10B_4151
Product
soluble pyridine nucleotide transhydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4257110 4258510 1401 467
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004099 (IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR000815 (IPR000815 (DEPRECATED) Mercuric reductase) Jul 2009
Automated Process Approved IPR016156 (IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sthA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012975
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4151 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product soluble pyridine nucleotide transhydrogenase Experimental - PubMed ID: 9922271
Reference: Escherichia coli 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000815 (DEPRECATED) Mercuric reductase Protein Sequence Similarity - InterPro Domain: IPR000815
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016156
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012975 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012975
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000774 sthA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000700 sthA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020421 sthA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000145 udhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001902 sthA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007500 sthA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004222 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007026 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004027 udhA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010248 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009114 sthA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010154 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081121 sthA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006444 sthA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007584 sthA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004551 sthA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008937 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001208 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008753 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007266 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007457 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006871 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010255 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007831 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008070 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007615 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007697 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007236 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007186 sthA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007139 sthA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029124 sthA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007835 sthA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008882 sthA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012975 sthA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003392 sthA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004344 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004404 sthA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134991 sthA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001803 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004564 sthA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064579 sthA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002514 sthA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002254 sthA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000642 sthA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008531 sthA CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004712 sthA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008772 sthA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012957 udhA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010002 udhA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007419 sthA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008810 sthA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007762 sthA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007727 sthA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007420 sthA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007922 sthA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008806 sthA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008711 sthA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004002 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003961 sthA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005132 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008951 sthA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006628 sthA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008400 sthA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006992 sthA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112908 sthA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085222 sthA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102724 sthA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005034 sthA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007771 sthA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006012 sthA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004337 sthA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009865 sthA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005761 sthA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004289 sthA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074925 sthA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090257 sthA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004290 udhA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004499 sthA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002383 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000415 sth CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003223 sth CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003359 sthA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002694 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241774 sthA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004223 sthA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000133 sthA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007717 sthA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003471 sthA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128483 sthA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005954 sthA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008776 sthA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002642 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006022 sthA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007164 sthA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029915 sthA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006849 sthA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000065 sthA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004238 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007421 sthA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004065 sthA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000128 sthA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000143 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004845 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4252110 to 4263510
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003666argECDScomplement42514164252567Downstream
AEC-0003667argCCDSforward42527214253725Downstream
AEC-0003668argBCDSforward42537364254509Downstream
AEC-0003669argHCDSforward42545704255943Downstream
AEC-0004287oxySncRNAcomplement42560054256114Downstream
AEC-0003670oxyRCDSforward42562104257127Overlaps Downstream
AEC-0003671sthACDScomplement42571104258510Matches
AEC-0003672fabRCDSforward42588444259491Upstream
AEC-0003673yijDCDSforward42594914259850Upstream
AEC-0003674trmACDScomplement42598904260990Upstream
AEC-0003675btuBCDSforward42613594263203Upstream
AEC-0003676murICDSforward42631484264005Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948