Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003676 (murI) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003676 showshow history
Names
murI ECDH10B_4156
Product
glutamate racemase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4263148 4264005 858 286
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004391 (IPR004391 Glutamate racemase) Jul 2009
Automated Process Approved IPR001920 (IPR001920 Asp/Glu racemase) Jul 2009
Automated Process Approved IPR015942 (IPR015942 Asp/Glu/hydantoin racemase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008881 glutamate racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012989
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4156 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamate racemase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004391 Glutamate racemase Protein Sequence Similarity - InterPro Domain: IPR004391
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015942 Asp/Glu/hydantoin racemase Protein Sequence Similarity - InterPro Domain: IPR015942
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001920 Asp/Glu racemase Protein Sequence Similarity - InterPro Domain: IPR001920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012989 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012989
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008881 glutamate racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001278 murI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001014 murI CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020428 murI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000149 murI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001910 murI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007494 murI CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004229 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007019 murI CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004034 murI CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010240 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009107 murI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010147 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081128 murI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006451 murI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007577 murI CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004559 murI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008942 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008761 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007274 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007465 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010263 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007823 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008078 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007623 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007705 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007228 murI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007147 murI CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029132 murI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007843 murI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008888 murI CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012989 murI CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003387 murI CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004349 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004409 murI CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134998 murI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001810 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004571 murI CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064574 murI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002536 murI CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001157 murI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000637 murI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008537 murI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003698 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004717 murI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008778 murI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012979 murI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009982 murI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007413 murI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008816 murI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007928 murI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008812 murI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004007 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003966 murI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005138 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008957 murI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008406 murI CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112895 murI CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085217 murI CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102740 murI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005028 murI CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004342 murI CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009871 murI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005752 murI CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004251 murI CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074920 murI CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090262 murI CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004295 murI CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004504 murI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002388 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000432 dga CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003228 dga CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003354 murI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003803 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241783 murI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004229 murI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000141 murI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007712 murI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003476 murI CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128465 murI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005959 murI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008771 murI CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006017 murI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007170 murI CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029920 murI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006855 murI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000073 murI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004230 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007416 murI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004071 murI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000134 murI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000151 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004837 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4258148 to 4269005
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003671sthACDScomplement42571104258510Upstream
AEC-0003672fabRCDSforward42588444259491Upstream
AEC-0003673yijDCDSforward42594914259850Upstream
AEC-0003674trmACDScomplement42598904260990Upstream
AEC-0003675btuBCDSforward42613594263203Overlaps Upstream
AEC-0003676murICDSforward42631484264005Matches
AEC-0004234rrsBrRNAforward42643794265920Downstream
AEC-0004182gltTtRNAforward42660924266167Downstream
AEC-0004235rrlBrRNAforward42663614269264Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948