Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003692 (thiF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003692 showshow history
Names
thiF ECDH10B_4181
Product
thiamin (thiazole moiety) biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4290540 4291295 756 252
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012731 (IPR012731 Thiazole biosynthesis adenylyltransferase ThiF) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR009036 (IPR009036 (DEPRECATED) Molybdenum cofactor biosynthesis, MoeB) Jul 2009
Automated Process Approved IPR000594 (IPR000594 THIF-type NAD/FAD binding fold) Jul 2009
Automated Process Approved IPR007901 (IPR007901 (DEPRECATED) MoeZ/MoeB) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thiF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013053
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4181 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thiamin (thiazole moiety) biosynthesis protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012731 Thiazole biosynthesis adenylyltransferase ThiF Protein Sequence Similarity - InterPro Domain: IPR012731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009036 (DEPRECATED) Molybdenum cofactor biosynthesis, MoeB Protein Sequence Similarity - InterPro Domain: IPR009036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007901 (DEPRECATED) MoeZ/MoeB Protein Sequence Similarity - InterPro Domain: IPR007901
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000594 THIF-type NAD/FAD binding fold Protein Sequence Similarity - InterPro Domain: IPR000594
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013053 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013053
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001929 thiF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002006 thiF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014920 thiF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001774 thiF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009142 thiF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004253 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006991 thiF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004049 thiF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010216 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009788 thiF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009092 ThiF CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081155 thiF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006067 thiF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010407 thiF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004584 thiF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008970 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006532 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008789 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007302 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006949 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010156 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010291 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009951 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008107 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010524 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010866 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010114 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006127 thiF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010612 thiF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029158 thiF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009582 thiF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008914 thiF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013053 thiF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003362 thiF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004376 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004434 thiF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135023 thiF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001829 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003836 thiF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060441 thiF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004198 thiF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003450 thiF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001369 thiF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008568 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003659 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004754 thiF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008808 thiF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013055 thiF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010476 thiF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008893 thiF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008847 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008685 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008488 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008653 thiF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007959 thiF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008841 thiF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009108 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004036 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003995 thiF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005175 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004192 thiF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008848 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008436 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008726 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112845 thiF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085191 thiF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102805 thiF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004997 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009250 thiF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009003 thiF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007650 thiF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004223 thiF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074895 thiF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090282 thiF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004319 thiF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004529 thiF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002766 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000924 thiF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003930 thiF_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002408 thiF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003084 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241722 thiF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004558 thiF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004312 thiF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008535 thiF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003633 thiF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127840 thiF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008565 thiF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008719 thiF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002618 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007564 thiF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008140 thiF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030109 thiF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009021 thiF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000290 thiF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004489 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008736 thiF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007884 thiF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000315 thiF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000367 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000404 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4285540 to 4296295
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003688rpoCCDSforward42830694287292Downstream
AEC-0003689htrCCDSforward42875054288044Downstream
AEC-0003690thiHCDScomplement42884544289587Downstream
AEC-0003691thiGCDScomplement42895844290354Downstream
AEC-0004007thiSCDScomplement42903564290556Overlaps Downstream
AEC-0003692thiFCDScomplement42905404291295Matches
AEC-0003693thiECDScomplement42912884291923Overlaps Upstream
AEC-0003694thiCCDScomplement42919234293818Upstream
AEC-0003695rsdCDScomplement42940514294527Upstream
AEC-0003696nudCCDSforward42946224295395Upstream
AEC-0003697hemECDSforward42954354296499Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948