Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003694 (thiC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003694 showshow history
Names
thiC ECDH10B_4183
Product
thiamin (pyrimidine moiety) biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4291923 4293818 1896 632
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002817 (IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002817
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thiC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013057
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4183 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product thiamin (pyrimidine moiety) biosynthesis protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B Protein Sequence Similarity - InterPro Domain: IPR002817
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013057 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013057
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002817
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000736 thiC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000713 thiC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014922 thiC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000185 thiC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001772 thiC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009144 thiC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006989 thiC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004051 thiC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010214 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009790 thiC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009090 ThiC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081157 thiC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006069 thiC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010409 thiC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004586 thiC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008972 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006534 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008791 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007304 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006951 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010154 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010293 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009949 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008109 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010522 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010868 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010116 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006125 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010614 thiC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029160 thiC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009584 thiC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008916 thiC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013057 thiC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003360 thiC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004378 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004436 thiC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135025 thiC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001831 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003834 thiC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060443 thiC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004197 thiC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003451 thiC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001371 thiC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008570 thiC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003657 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004756 thiC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008810 thiC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013061 thiC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010472 thiC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008891 thiC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008849 thiC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008687 thiC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008486 thiC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008651 thiC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007961 thiC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008843 thiC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009106 thiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004038 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003997 thiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005177 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004194 thiC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008846 thiC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008438 thiC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008728 thiC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112842 thiC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085189 thiC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102811 thiC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004995 thiC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009248 thiC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009005 thiC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004371 thiC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009904 thiC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007652 thiC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004221 thiC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074893 thiC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090284 thiC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004321 thiC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004531 thiC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002764 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000929 thiC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003928 thiC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002410 thiC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003082 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241720 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004560 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004310 thiC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008533 thiC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003635 thiC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127837 thiC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008567 thiC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008721 thiC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002620 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007566 thiC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008142 thiC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030111 thiC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009023 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000292 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004487 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008734 thiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007882 thiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000317 thiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000369 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000406 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4286923 to 4298818
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003688rpoCCDSforward42830694287292Downstream
AEC-0003689htrCCDSforward42875054288044Downstream
AEC-0003690thiHCDScomplement42884544289587Downstream
AEC-0003691thiGCDScomplement42895844290354Downstream
AEC-0004007thiSCDScomplement42903564290556Downstream
AEC-0003692thiFCDScomplement42905404291295Downstream
AEC-0003693thiECDScomplement42912884291923Overlaps Downstream
AEC-0003694thiCCDScomplement42919234293818Matches
AEC-0003695rsdCDScomplement42940514294527Upstream
AEC-0003696nudCCDSforward42946224295395Upstream
AEC-0003697hemECDSforward42954354296499Upstream
AEC-0003698nfiCDSforward42965094297180Upstream
AEC-0003699yjaGCDSforward42972234297813Upstream
AEC-0003700hupACDSforward42980004298272Upstream
AEC-0003701yjaHCDSforward42982854298980Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948