Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003705 (purD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003705 showshow history
Names
purD ECDH10B_4194
Product
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4302361 4303650 1290 430
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000115 (IPR000115 Phosphoribosylglycinamide synthetase) Jul 2009
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Jul 2009
Automated Process Approved IPR013815 (IPR013815 ATP-grasp fold, subdomain 1) Jul 2009
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Jul 2009
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2009
Automated Process Approved IPR011054 (IPR011054 Rudiment single hybrid motif) Jul 2009
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004637 phosphoribosylamine-glycine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013095
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4194 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013815 ATP-grasp fold, subdomain 1 Protein Sequence Similarity - InterPro Domain: IPR013815
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011054 Rudiment single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011054
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000115 Phosphoribosylglycinamide synthetase Protein Sequence Similarity - InterPro Domain: IPR000115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013095 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013095
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004637 phosphoribosylamine-glycine ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000848 purD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000820 purD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014932 purD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000193 purD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001759 purD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009156 purD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004266 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006977 purD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004062 purD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010200 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009803 purD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009077 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081169 purD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006082 purD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010422 purD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004598 purD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008985 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006546 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008804 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007317 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006964 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010141 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010306 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009936 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008122 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010509 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010881 purD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010129 purD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006112 purD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010627 purD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029172 purD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009597 purD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008928 purD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013095 purD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003349 purD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004390 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004448 purD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135036 purD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001842 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003824 purD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060453 purD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000156 purD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001277 purD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001379 purD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008582 purD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003643 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004767 purD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008822 purD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013100 purD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010431 purD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008879 purD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008861 purD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008699 purD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008474 purD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008639 purD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007973 purD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008855 purD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009094 purD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004049 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004008 purD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005189 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004206 purD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008450 purD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008740 purD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112816 purD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085178 purD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102841 purD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004983 purD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009236 purD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009018 purD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004382 purD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009916 purD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004210 purD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074882 purD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090295 purD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004332 purD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004542 purD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002756 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000950 purD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003920 purD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003926 purD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003074 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241706 purD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004570 purD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004300 purD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008524 purD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003645 purD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127818 purD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008576 purD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008731 purD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007575 purD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008152 purD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030121 purD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009033 purD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000302 purD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004477 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008725 purD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007872 purD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000326 purD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000379 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000416 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4297361 to 4308650
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003699yjaGCDSforward42972234297813Downstream
AEC-0003700hupACDSforward42980004298272Downstream
AEC-0003701yjaHCDSforward42982854298980Downstream
AEC-0003702zraPCDScomplement42989824299407Downstream
AEC-0003703zraSCDSforward42996454301042Downstream
AEC-0003704zraRCDSforward43010394302364Overlaps Downstream
AEC-0003705purDCDScomplement43023614303650Matches
AEC-0003706purHCDScomplement43036624305251Upstream
AEC-0004237rrsErRNAforward43058664307407Upstream
AEC-0004187gltVtRNAforward43074934307568Upstream
AEC-0004238rrlErRNAforward43077624310665Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948