Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003711 (aceA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003711 showshow history
Names
aceA ECDH10B_4204
Product
isocitrate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4314828 4316132 1305 435
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006254 (IPR006254 Isocitrate lyase) Jul 2009
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2009
Automated Process Approved IPR000918 (IPR000918 (DEPRECATED) Isocitrate lyase/phosphorylmutase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004451 isocitrate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aceA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013128
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4204 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product isocitrate lyase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006254 Isocitrate lyase Protein Sequence Similarity - InterPro Domain: IPR006254
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000918 (DEPRECATED) Isocitrate lyase/phosphorylmutase Protein Sequence Similarity - InterPro Domain: IPR000918
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013128 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013128
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004451 isocitrate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001558 aceA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001550 aceA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017816 aceA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001918 aceA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006246 aceA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004276 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006967 aceA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004071 aceA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010191 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006149 aceA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007745 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081180 aceA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006092 aceA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006547 aceA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004609 aceA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008995 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003039 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008813 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007326 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006973 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008965 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010315 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006988 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008131 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007102 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005682 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006452 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006103 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004952 aceA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029182 aceA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006955 aceA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008938 aceA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013128 aceA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004101 aceA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004400 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004461 aceA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135045 aceA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003247 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004583 aceA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064309 aceA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002295 aceA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001039 aceA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002985 aceA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008592 aceA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003632 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004782 aceA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008832 aceA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013119 aceA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012397 aceA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007922 aceA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008872 aceA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007277 aceA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003939 aceA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005657 aceA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007982 aceA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008865 aceA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008169 aceA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004058 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004017 aceA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005202 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004216 aceA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007734 aceA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008459 aceA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008472 aceA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114320 aceA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085839 aceA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102871 aceA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004972 aceA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007615 aceA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005694 aceA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009927 aceA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004559 aceA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004889 aceA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074872 aceA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256168 aceA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004341 aceA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004551 aceA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002278 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011156 aceA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003385 aceA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003795 aceA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003539 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241692 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004745 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000025 aceA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007510 aceA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003649 aceA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127798 aceA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008534 aceA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008265 aceA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003599 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009193 aceA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008237 aceA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029599 aceA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006284 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000022 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000203 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007514 aceA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004234 aceA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003768 aceA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004578 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000426 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4309828 to 4321132
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004238rrlErRNAforward43077624310665Upstream
AEC-0004239rrfErRNAforward43107594310878Upstream
AEC-0003707yjaACDSforward43109534311336Upstream
AEC-0003708yjaBCDScomplement43113994311842Upstream
AEC-0003709metACDSforward43119994312928Upstream
AEC-0003710aceBCDSforward43131974314798Upstream
AEC-0003711aceACDSforward43148284316132Matches
AEC-0003712aceKCDSforward43163154318051Downstream
AEC-0003713arpACDScomplement43180204320206Downstream
AEC-0003714iclRCDScomplement43205234321347Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948