Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003715 (metH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003715 showshow history
Names
metH ECDH10B_4208
Product
homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4321547 4325230 3684 1228
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011822 (IPR011822 Cobalamin-dependent methionine synthase) Jul 2009
Automated Process Approved IPR003726 (IPR003726 Homocysteine-binding domain) Jul 2009
Automated Process Approved IPR000489 (IPR000489 Pterin-binding domain) Jul 2009
Automated Process Approved IPR003759 (IPR003759 Cobalamin (vitamin B12)-binding module, cap domain) Jul 2009
Automated Process Approved IPR006158 (IPR006158 Cobalamin (vitamin B12)-binding domain) Jul 2009
Automated Process Approved IPR004223 (IPR004223 Vitamin B12-dependent methionine synthase, activation domain) Jul 2009
Automated Process Approved IPR011005 (IPR011005 Dihydropteroate synthase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004223
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004156 dihydropteroate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008705 methionine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031419 cobalamin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name metH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013140
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4208 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003726 Homocysteine-binding domain Protein Sequence Similarity - InterPro Domain: IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011822 Cobalamin-dependent methionine synthase Protein Sequence Similarity - InterPro Domain: IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000489 Pterin-binding domain Protein Sequence Similarity - InterPro Domain: IPR000489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Protein Sequence Similarity - InterPro Domain: IPR003759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011005 Dihydropteroate synthase-like Protein Sequence Similarity - InterPro Domain: IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004223 Vitamin B12-dependent methionine synthase, activation domain Protein Sequence Similarity - InterPro Domain: IPR004223
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006158 Cobalamin (vitamin B12)-binding domain Protein Sequence Similarity - InterPro Domain: IPR006158
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013140 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013140
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004223
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031419 cobalamin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008705 methionine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011822
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004156 dihydropteroate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001732 metH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001645 metH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017820 metH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001923 metH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006250 metH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004279 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006963 metH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004074 metH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010187 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006154 metH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007741 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081184 metH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006096 metH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006552 metH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004612 metH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009000 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003044 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008817 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007330 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006977 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008961 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010319 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006992 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008135 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007106 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005686 metH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006456 metH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006099 metH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004956 metH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029186 metH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006958 metH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008943 metH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013140 metH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004105 metH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004404 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004464 metH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135049 metH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003252 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004586 metH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064306 metH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002296 metH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001038 metH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002977 metH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008597 metH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003628 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004788 metH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008838 metH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013132 metH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012409 metH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007917 metH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008878 metH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007283 metH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003944 metH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005662 metH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007987 metH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008871 metH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008175 metH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004062 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004021 metH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005207 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004221 metH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007728 metH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008465 metH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008478 metH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114328 metH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085842 metH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102885 metH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004966 metH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007609 metH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005700 metH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004397 metH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004882 metH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074867 metH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090300 metH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004345 metH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004555 metH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002275 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011139 metH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003376 metH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003066 metH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003543 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241689 metH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008047 metH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000028 metH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007513 metH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003651 metH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127790 metH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008537 metH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008268 metH CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009196 metH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008234 metH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029603 metH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006287 metH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000025 metH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000206 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007511 metH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004237 metH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003765 metH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004575 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000429 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4316547 to 4330230
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003712aceKCDSforward43163154318051Upstream
AEC-0003713arpACDScomplement43180204320206Upstream
AEC-0003714iclRCDScomplement43205234321347Upstream
AEC-0003715metHCDSforward43215474325230Matches
AEC-0003716yjbBCDSforward43254504327081Downstream
AEC-0003717pepECDScomplement43271724327861Downstream
AEC-0003718rluFCDSforward43280734328945Downstream
AEC-0003719yjbDCDScomplement43290784329350Downstream
AEC-0003720lysCCDScomplement43296034330952Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948