Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003720 (lysC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003720 showshow history
Names
lysC ECDH10B_4213
Product
aspartokinase III
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4329603 4330952 1350 450
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005260 (IPR005260 Aspartate kinase, monofunctional class) Jul 2009
Automated Process Approved IPR001341 (IPR001341 Aspartate kinase) Jul 2009
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Jul 2009
Automated Process Approved IPR002912 (IPR002912 ACT domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lysC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013156
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4213 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aspartokinase III Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005260 Aspartate kinase, monofunctional class Protein Sequence Similarity - InterPro Domain: IPR005260
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001341 Aspartate kinase Protein Sequence Similarity - InterPro Domain: IPR001341
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013156 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013156
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000944 lysC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001180 lysC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017825 lysC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003217 lysC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002037 lysC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006255 lysC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004293 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006958 lysC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004088 lysC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010182 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006162 lysC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007733 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081198 lysC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006104 lysC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006560 lysC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004633 lysC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009009 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008830 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007343 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006990 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008948 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010332 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007005 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008148 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007119 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005699 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006469 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006086 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004969 lysC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029199 lysC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006972 lysC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008951 lysC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013156 lysC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004110 lysC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004413 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004477 lysC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135119 lysC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003265 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004601 lysC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064300 lysC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002280 lysC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002201 lysC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003858 lysC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008639 lysC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003622 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004828 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008853 lysC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013172 lysC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012444 lysC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007880 lysC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008917 lysC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007321 lysC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003955 lysC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005698 lysC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008024 lysC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008907 lysC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008212 lysC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004073 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004032 lysC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005223 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004258 lysC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007713 lysC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008475 lysC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114347 lysC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085853 lysC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102974 lysC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004930 lysC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007598 lysC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005737 lysC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004409 lysC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009947 lysC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004578 lysC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004764 lysC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074753 lysC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090392 lysC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004449 lysC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004567 lysC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002272 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011134 apk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003372 lysC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003062 lysC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003544 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241684 lysC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008043 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000033 lysC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007516 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003654 lysC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127783 lysC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008540 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008271 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001250 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009200 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008230 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029606 lysC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006291 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000030 lysC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000210 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004240 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003762 lysC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004571 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000432 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4324603 to 4335952
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003715metHCDSforward43215474325230Downstream
AEC-0003716yjbBCDSforward43254504327081Downstream
AEC-0003717pepECDScomplement43271724327861Downstream
AEC-0003718rluFCDSforward43280734328945Downstream
AEC-0003719yjbDCDScomplement43290784329350Downstream
AEC-0003720lysCCDScomplement43296034330952Matches
AEC-0003721pgiCDSforward43314774333126Upstream
AEC-0003722yjbECDSforward43336254333867Upstream
AEC-0003723yjbFCDSforward43339814334619Upstream
AEC-0003724yjbGCDSforward43346164335353Upstream
AEC-0003725yjbHCDSforward43353534337449Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948