Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003721 (pgi) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003721 showshow history
Names
pgi ECDH10B_4214
Product
glucosephosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4331477 4333126 1650 550
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001672 (IPR001672 Phosphoglucose isomerase (PGI)) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004347 glucose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgi Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013163
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4214 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucosephosphate isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001672 Phosphoglucose isomerase (PGI) Protein Sequence Similarity - InterPro Domain: IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013163 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013163
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004347 glucose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000171 pgi CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000236 pgi CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017827 pgi CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003216 pgi CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002035 pgi CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006257 pgi CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004294 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006956 pgi CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004089 pgi CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010181 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006164 pgi CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007731 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081199 pgi CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006106 pgi CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006562 pgi CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004635 pgi CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009010 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003057 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008832 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007345 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006992 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008946 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010334 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007007 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008150 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007121 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005701 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006471 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006084 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004971 pgi CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029200 pgi CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006974 pgi CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008953 pgi CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013163 pgi CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004111 pgi CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004414 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004478 pgi CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135120 pgi CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003266 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004602 pgi CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064298 pgi CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002293 pgi CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001035 pgi CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003857 pgi CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008640 pgi CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003621 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004829 pgi CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008854 pgi CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013176 pgi CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012448 pgi CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007879 pgi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008918 pgi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007322 pgi CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003956 pgi CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005699 pgi CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008025 pgi CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008908 pgi CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008213 pgi CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004074 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004033 pgi CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005225 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004259 pgi CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007712 pgi CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008476 pgi CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008490 pgi CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114350 pgi CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085854 pgi CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102978 pgi CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004929 pgi CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007597 pgi CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005738 pgi CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004410 pgi CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009949 pgi CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004580 pgi CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004763 pgi CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074754 pgi CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090391 pgi CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004448 pgi CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004568 pgi CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002271 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011130 pgi CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003371 pgi CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003061 pgi CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003545 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241683 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008042 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000034 pgi CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007517 pgi CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003655 pgi CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127779 pgi CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008541 pgi CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008272 pgi CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001251 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009201 pgi CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008229 pgi CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029607 pgi CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006292 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000031 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000211 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007507 pgi CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004241 pgi CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003761 pgi CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004570 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000433 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4326477 to 4338126
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003716yjbBCDSforward43254504327081Upstream
AEC-0003717pepECDScomplement43271724327861Upstream
AEC-0003718rluFCDSforward43280734328945Upstream
AEC-0003719yjbDCDScomplement43290784329350Upstream
AEC-0003720lysCCDScomplement43296034330952Upstream
AEC-0003721pgiCDSforward43314774333126Matches
AEC-0003722yjbECDSforward43336254333867Downstream
AEC-0003723yjbFCDSforward43339814334619Downstream
AEC-0003724yjbGCDSforward43346164335353Downstream
AEC-0003725yjbHCDSforward43353534337449Downstream
AEC-0003726yjbACDSforward43380444338454Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948