Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003727 (xylE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003727 showshow history
Names
xylE ECDH10B_4220
Product
D-xylose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4338498 4339973 1476 492
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003663 (IPR003663 Sugar/inositol transporter) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Automated Process Approved IPR005828 (IPR005828 Major facilitator, sugar transporter-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0022891 (DEPRECATED) substrate-specific transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xylE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013189
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4220 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-xylose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003663 Sugar/inositol transporter Protein Sequence Similarity - InterPro Domain: IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005828 Major facilitator, sugar transporter-like Protein Sequence Similarity - InterPro Domain: IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013189 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013189
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0022891 (DEPRECATED) substrate-specific transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002948 xylE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003123 xylE CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006265 xylE CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006948 xylE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010169 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006172 xylE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007723 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006114 xylE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006570 xylE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009019 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003066 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008840 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007353 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007000 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008938 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010342 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007015 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008158 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007129 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005709 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006479 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006076 xylE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004979 xylE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029206 xylE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008960 xylE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013189 xylE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004117 xylE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004422 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135126 xylE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003275 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003615 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008482 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008496 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074762 xylE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090385 xylE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004574 xylE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001161 xylE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4333498 to 4344973
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003722yjbECDSforward43336254333867Downstream
AEC-0003723yjbFCDSforward43339814334619Downstream
AEC-0003724yjbGCDSforward43346164335353Downstream
AEC-0003725yjbHCDSforward43353534337449Downstream
AEC-0003726yjbACDSforward43380444338454Downstream
AEC-0003727xylECDScomplement43384984339973Matches
AEC-0003728malGCDScomplement43403454341235Upstream
AEC-0003729malFCDScomplement43412504342794Upstream
AEC-0003730malECDScomplement43429484344138Upstream
AEC-0003731malKCDSforward43445034345618Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948