Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003730 (malE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003730 showshow history
Names
malE ECDH10B_4223
Product
maltose transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4342948 4344138 1191 397
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006060 (IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein) Jul 2009
Automated Process Approved IPR006061 (IPR006061 Solute-binding family 1, conserved site) Jul 2009
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015768 maltose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005363 maltose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013200
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4223 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product maltose transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein Protein Sequence Similarity - InterPro Domain: IPR006060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006061 Solute-binding family 1, conserved site Protein Sequence Similarity - InterPro Domain: IPR006061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013200 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013200
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015768 maltose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005363 maltose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002144 malE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002235 malE CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002009 malE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006268 malE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004303 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006945 malE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004098 malE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010164 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006175 malE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007720 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081212 malE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006117 malE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006573 malE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004644 malE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009023 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003069 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008843 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007356 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007003 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008935 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010345 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007018 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008161 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007132 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005712 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006482 malE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006073 malE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004982 malE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029209 malE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006984 malE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008963 malE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013200 malE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004120 malE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004425 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004488 malE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135129 malE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003278 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004613 malE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008648 malE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003610 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004839 malE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008862 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013207 malE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012477 malE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007871 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008926 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007330 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003966 malE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005707 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008034 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008917 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008222 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004082 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004041 malE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005234 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004267 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007704 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008485 malE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008499 malE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114367 malE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085862 malE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102999 malE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007589 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005746 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004592 malE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074766 malE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090382 malE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004440 malE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004577 malE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002267 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011113 malE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003367 malE_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003057 malE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003708 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241660 malE1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008038 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000038 malE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007521 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003659 malE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127751 malE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008545 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008276 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001256 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009205 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008225 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029611 malE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006296 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000035 malE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000215 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007503 malE2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004245 malE2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003757 malE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004564 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000438 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4337948 to 4349138
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003726yjbACDSforward43380444338454Downstream
AEC-0003727xylECDScomplement43384984339973Downstream
AEC-0003728malGCDScomplement43403454341235Downstream
AEC-0003729malFCDScomplement43412504342794Downstream
AEC-0003730malECDScomplement43429484344138Matches
AEC-0003731malKCDSforward43445034345618Upstream
AEC-0003732lamBCDSforward43456904347030Upstream
AEC-0003733malMCDSforward43472734348193Upstream
AEC-0003734yjbICDSforward43486744350002Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948