Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003736 (ubiA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003736 showshow history
Names
ubiA ECDH10B_4229
Product
p-hydroxybenzoate octaprenyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4350735 4351607 873 291
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000537 (IPR000537 UbiA prenyltransferase family) Jul 2009
Automated Process Approved IPR006370 (IPR006370 4-hydroxybenzoate polyprenyltransferase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006370
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ubiA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013229
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4229 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product p-hydroxybenzoate octaprenyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000537 UbiA prenyltransferase family Protein Sequence Similarity - InterPro Domain: IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006370 4-hydroxybenzoate polyprenyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR006370
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013229 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013229
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006370
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000476 ubiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000492 ubiA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018672 ubiA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003209 ubiA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002003 ubiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006277 ubiA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004308 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006935 ubiA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004103 ubiA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010156 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006182 ubiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007712 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081218 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006125 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006580 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004651 ubiA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009030 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003076 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008849 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007362 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007009 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008929 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010351 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007024 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008167 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007138 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005718 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006488 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006067 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004988 ubiA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029215 ubiA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006991 ubiA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008969 ubiA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013229 ubiA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004126 ubiA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004432 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004494 ubiA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135135 ubiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003285 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004619 ubiA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060851 ubiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000340 ubiA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000156 ubiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000945 ubiA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008653 ubiA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003604 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004844 ubiA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008867 ubiA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013226 ubiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012496 ubiA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007866 ubiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008931 ubiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007335 ubiA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003971 ubiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005712 ubiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008039 ubiA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008922 ubiA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008228 ubiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004087 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004046 ubiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005242 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004272 ubiA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007699 ubiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008490 ubiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008504 ubiA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114378 ubiA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085867 ubiA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103028 ubiA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004915 ubiA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007584 ubiA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005751 ubiA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004435 ubiA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009976 ubiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004596 ubiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005139 ubiA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074773 ubiA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090377 ubiA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004432 ubiA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004585 ubiA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002262 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011092 b4040 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003361 ubiA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003051 ubiA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002661 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235294 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004784 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004739 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007977 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002996 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116363 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006775 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006975 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001184 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005603 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007431 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030194 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004822 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004037 ubiA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004397 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008779 ubiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007800 ubiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000398 ubiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000461 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004581 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4345735 to 4356607
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003732lamBCDSforward43456904347030Upstream
AEC-0003733malMCDSforward43472734348193Upstream
AEC-0003734yjbICDSforward43486744350002Upstream
AEC-0003735ubiCCDSforward43502254350722Upstream
AEC-0003736ubiACDSforward43507354351607Matches
AEC-0003737plsBCDScomplement43517624354185Downstream
AEC-0003738dgkACDSforward43543564354724Downstream
AEC-0003739lexACDSforward43548344355442Downstream
AEC-0003740dinFCDSforward43554614356840Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948