Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003749 (alr) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003749 showshow history
Names
alr ECDH10B_4242
Product
alanine racemase 1, PLP-binding, biosynthetic
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4363501 4364580 1080 360
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001608 (IPR001608 Alanine racemase, N-terminal) Jul 2009
Automated Process Approved IPR011079 (IPR011079 Alanine racemase, C-terminal) Jul 2009
Automated Process Approved IPR000821 (IPR000821 Alanine racemase) Jul 2009
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alr Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013272
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4242 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alanine racemase 1, PLP-binding, biosynthetic Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011079 Alanine racemase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001608 Alanine racemase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001608
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000821 Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013272 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013272
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001841 alr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001857 alr CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019770 alr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001990 alr2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006328 alr2 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004321 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006921 alr CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004118 alr CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010142 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006258 alr2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009250 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081236 alr CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006139 alr2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006594 alr2 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004662 alr CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009042 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003107 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008883 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007396 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007041 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006282 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010385 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007057 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008201 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007171 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005753 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006500 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006033 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005022 alr2 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029227 alr CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007003 alr CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008982 alr2 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013272 alr CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004139 alr CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004446 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004506 alr2 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135147 alr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003297 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004635 alr CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063980 alr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002100 alr CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002126 alr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000873 alr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008666 alr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003591 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004858 alr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008880 alr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013266 alr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012534 alr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007853 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008944 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007348 alr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003984 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005725 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008052 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008935 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008241 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004100 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004059 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005256 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004285 alr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007686 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008558 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006249 alr CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114407 alr CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085880 alr CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103067 alr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004902 alr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007570 alr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005764 alr CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004422 alr CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009961 alr2 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004611 alr2 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005124 alr CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074786 alr CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090364 alr CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004419 alr CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004598 alr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003685 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011065 alr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003351 alr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001472 alr CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002651 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235315 alr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004859 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004729 alr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007968 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002987 alr CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116400 alr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006766 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006966 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001600 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005612 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007440 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030203 alr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004813 alr2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004027 alr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004387 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008788 alr2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007791 alr2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000407 alr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000471 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004571 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4358501 to 4369580
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004530pseudogeneforward43580404359025Upstream
AEC-0003744yjbMCDSpforward43583184359025Upstream
AEC-0003745dusACDSforward43593884360425Upstream
AEC-0003746yjbOCDSforward43605594360801Upstream
AEC-0003747qorCDScomplement43609674361950Upstream
AEC-0003748dnaBCDSforward43620334363448Upstream
AEC-0003749alrCDSforward43635014364580Matches
AEC-0003750tyrBCDSforward43648334366026Downstream
AEC-0004547yjbSpseudogenecomplement43662484366731Downstream
AEC-0003751aphACDSforward43671334367846Downstream
AEC-0003752yjbQCDSforward43679574368373Downstream
AEC-0003753yjbRCDSforward43683774368733Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948