Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003750 (tyrB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003750 showshow history
Names
tyrB ECDH10B_4243
Product
tyrosine aminotransferase, tyrosine-repressible, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4364833 4366026 1194 398
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Automated Process Approved IPR004838 (IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR000796 (IPR000796 Aspartate/other aminotransferase) Jul 2009
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tyrB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013278
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4243 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tyrosine aminotransferase, tyrosine-repressible, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000796 Aspartate/other aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013278 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013278
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000792 tyrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000796 tyrB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019779 tyrB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003196 tyrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001989 tyrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006330 tyrB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004324 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006919 tyrB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004121 tyrB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010141 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006260 tyrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009249 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081239 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006141 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006596 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004665 tyrB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009043 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003108 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008884 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007397 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007042 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006281 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010386 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007058 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008202 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007172 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005754 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006501 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006032 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005023 tyrB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029228 tyrB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007006 tyrB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008983 tyrB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013278 tyrB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004140 tyrB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004447 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004507 tyrB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135148 tyrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003298 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004638 tyrB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063985 tyrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002083 tyrB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002128 tyrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003088 tyrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008667 tyrB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003590 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004859 tyrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008882 tyrB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013270 tyrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012538 tyrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007851 tyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008946 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007350 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003985 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005726 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008053 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008937 tyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008243 tyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004101 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004060 tyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005258 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004287 tyrB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007684 tyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008560 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006251 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114411 tyrB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085881 tyrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103074 tyrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004900 tyrB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007569 tyrB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005766 tyrB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004421 tyrB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009960 tyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004612 tyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005123 tyrB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074788 tyrB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090363 tyrB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004418 tyrB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004599 tyrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003686 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011062 tyrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003350 tyrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001471 tyrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002650 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235316 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004858 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004728 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007967 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002986 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116404 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006765 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006965 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003412 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005613 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007441 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030204 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004812 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004026 tyrB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004386 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008789 tyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007790 tyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000408 tyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000472 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004570 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4359833 to 4371026
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003745dusACDSforward43593884360425Upstream
AEC-0003746yjbOCDSforward43605594360801Upstream
AEC-0003747qorCDScomplement43609674361950Upstream
AEC-0003748dnaBCDSforward43620334363448Upstream
AEC-0003749alrCDSforward43635014364580Upstream
AEC-0003750tyrBCDSforward43648334366026Matches
AEC-0004547yjbSpseudogenecomplement43662484366731Downstream
AEC-0003751aphACDSforward43671334367846Downstream
AEC-0003752yjbQCDSforward43679574368373Downstream
AEC-0003753yjbRCDSforward43683774368733Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948