Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003763 (acs) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003763 showshow history
Names
acs ECDH10B_4259
Product
acetyl-CoA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4383132 4385090 1959 653
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Jul 2009
Automated Process Approved IPR011904 (IPR011904 Acetate-CoA ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016208 AMP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011904
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003987 acetate-CoA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011904
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acs Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013337
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4259 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product acetyl-CoA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011904 Acetate-CoA ligase Protein Sequence Similarity - InterPro Domain: IPR011904
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013337 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013337
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016208 AMP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011904
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003987 acetate-CoA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011904
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001436 acs CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001399 acs CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018289 acs CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003173 acs CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001961 acsA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006350 acsA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004352 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006901 acsA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004146 acs CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010122 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006278 acsA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081272 acs CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006159 acsA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006615 acsA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004689 acs CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009062 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003126 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008902 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007415 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007060 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006264 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010404 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007076 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008220 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007190 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005772 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006519 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006014 acsA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005041 acsA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029243 acs CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007036 acs_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009002 acsA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013337 acs CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004156 acs CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004464 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004523 acsA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135163 acs CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003317 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004668 acs CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003334 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002530 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001239 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008697 acsA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003560 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004888 acs CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008909 acsA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013385 acs CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012648 acs CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007822 acsA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008974 acsA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007379 acsA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004013 acsA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005755 acsA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008082 acsA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008966 acsA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008271 acsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004128 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004087 acs CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005295 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004317 acsA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007470 acsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008591 acsA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006280 acsA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114479 acs CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085908 acs CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103160 acs CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004869 acsA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007539 acsA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005796 acsA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004633 acsA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004399 acs CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004617 acs CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002985 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000980 acs CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002803 acs CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002008 acs CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001164 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235147 acs CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008071 acsA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004805 acs CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008039 acsA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003054 acs CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116169 acs CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006836 acsA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007036 acsA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001980 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005540 acsA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007369 acsA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030135 acs CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004882 acsA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004103 acs CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004463 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008804 acsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007862 acsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000339 rcs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000394 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004649 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4378132 to 4390090
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003759yjcECDSforward43776994379348Downstream
AEC-0003760yjcFCDScomplement43795024380794Downstream
AEC-0003761actPCDScomplement43809724382621Downstream
AEC-0003762yjcHCDScomplement43826184382932Downstream
AEC-0003763acsCDScomplement43831324385090Matches
AEC-0003764nrfACDSforward43854834386919Upstream
AEC-0000055IS1A.7repeat_regionforward43871764387943Upstream
AEC-0003765nrfCCDSforward43883044388975Upstream
AEC-0003766nrfDCDSforward43889724389928Upstream
AEC-0003767nrfECDSforward43900084391666Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948