Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003765 (nrfC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003765 showshow history
Names
nrfC ECDH10B_4263
Product
formate-dependent nitrite reductase, 4Fe4S subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4388304 4388975 672 224
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Automated Process Approved IPR017567 (IPR017567 Cytochrome c nitrite reductase, Fe-S protein) Jul 2009
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrfC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013346
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4263 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product formate-dependent nitrite reductase, 4Fe4S subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017567 Cytochrome c nitrite reductase, Fe-S protein Protein Sequence Similarity - InterPro Domain: IPR017567
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013346 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013346
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002731 nrfC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002827 nrfC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016812 nrfC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001958 nrfC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006353 nrfC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004356 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006898 nrfC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004149 nrfC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010116 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006281 nrfC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009222 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081276 nrfC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006162 nrfC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006618 nrfC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004692 nrfC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009065 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003129 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008905 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007418 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007063 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006261 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010407 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007079 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008223 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007193 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005775 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006522 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006011 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005044 nrfC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029246 nrfC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007039 ydhX_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009005 nrfC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013346 nrfC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004159 nrfC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004467 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004526 nrfC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135166 nrfC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003320 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004671 nrfC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062136 nrfC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001034 nrfC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000484 nrfC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002113 nrfC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008700 nrfC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003557 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004892 nrfC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008912 nrfC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013404 nrfC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012667 nrfC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007819 nrfC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008977 nrfC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007382 nrfC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004016 nrfC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005758 nrfC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008085 nrfC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008969 nrfC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008274 nrfC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004132 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004091 nrfC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005299 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004320 nrfC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007467 nrfC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008594 nrfC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006283 nrfC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114494 nrfC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085912 nrfC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103175 nrfC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004866 nrfC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007535 nrfC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005799 nrfC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004467 nrfC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010012 nrfC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004636 nrfC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074810 nrfC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090345 nrfC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004396 nrfC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004620 nrfC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003310 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004899 ttrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003581 dmsB_4 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000027 ttrB_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002717 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4383304 to 4393975
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003763acsCDScomplement43831324385090Upstream
AEC-0003764nrfACDSforward43854834386919Upstream
AEC-0000055IS1A.7repeat_regionforward43871764387943Upstream
AEC-0003765nrfCCDSforward43883044388975Matches
AEC-0003766nrfDCDSforward43889724389928Overlaps Downstream
AEC-0003767nrfECDSforward43900084391666Downstream
AEC-0003768nrfFCDSforward43916594392042Downstream
AEC-0003769nrfGCDSforward43920394392635Downstream
AEC-0003770gltPCDSforward43929774394290Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948