Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003766 (nrfD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003766 showshow history
Names
nrfD ECDH10B_4264
Product
formate-dependent nitrite reductase, membrane subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4388972 4389928 957 319
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005614 (IPR005614 NrfD family) Jul 2009
Automated Process Approved IPR017566 (IPR017566 NrfD) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrfD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013348
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4264 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product formate-dependent nitrite reductase, membrane subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005614 NrfD family Protein Sequence Similarity - InterPro Domain: IPR005614
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017566 NrfD Protein Sequence Similarity - InterPro Domain: IPR017566
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013348 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013348
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002734 nrfD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002861 nrfD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016811 nrfD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001957 nrfD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006354 nrfD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004357 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006897 nrfD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004150 nrfD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010115 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006282 nrfD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009221 NrfD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081277 nrfD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006163 nrfD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006619 nrfD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004693 nrfD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009066 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003130 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008906 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007419 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007064 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006260 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010408 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007080 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008224 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007194 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005776 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006523 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006010 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005045 nrfD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029247 nrfD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007040 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009006 nrfD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013348 nrfD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004160 nrfD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004468 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004527 nrfD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135167 nrfD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003321 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004672 nrfD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062137 nrfD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001035 nrfD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000485 nrfD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002114 nrfD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008701 nrfD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003556 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004893 nrfD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008913 nrfD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013409 nrfD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012672 nrfD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007818 nrfD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008978 nrfD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007383 nrfD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004017 nrfD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005759 nrfD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008086 nrfD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008970 nrfD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008275 nrfD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004133 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004092 nrfD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005300 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004321 nrfD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007466 nrfD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008595 nrfD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006284 nrfD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114498 nrfD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085913 nrfD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103178 nrfD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004865 nrfD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007534 nrfD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005800 nrfD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004468 nrfD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010013 nrfD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004637 nrfD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074811 nrfD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090346 nrfD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004395 nrfD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004621 nrfD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003311 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003580 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002718 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4383972 to 4394928
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003763acsCDScomplement43831324385090Upstream
AEC-0003764nrfACDSforward43854834386919Upstream
AEC-0000055IS1A.7repeat_regionforward43871764387943Upstream
AEC-0003765nrfCCDSforward43883044388975Overlaps Upstream
AEC-0003766nrfDCDSforward43889724389928Matches
AEC-0003767nrfECDSforward43900084391666Downstream
AEC-0003768nrfFCDSforward43916594392042Downstream
AEC-0003769nrfGCDSforward43920394392635Downstream
AEC-0003770gltPCDSforward43929774394290Downstream
AEC-0003771yjcOCDScomplement43948214395510Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948