Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003777 (alsK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003777 showshow history
Names
alsK ECDH10B_4275
Product
D-allose kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4405255 4406184 930 310
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000600 (IPR000600 ROK family) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alsK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013380
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4275 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-allose kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000600 ROK family Protein Sequence Similarity - InterPro Domain: IPR000600
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013380 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013380
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004855 alsK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004726 alsK CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006370 alsK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004377 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006883 alsK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004167 yjcT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010096 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006298 alsK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009206 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081297 alsK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006634 alsK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004710 alsK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007063 alsK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013380 alsK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004172 alsK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004482 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004542 alsK CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004689 yjcT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001167 alsK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4400255 to 4411184
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003774yjcQCDScomplement43994124401463Downstream
AEC-0003775yjcRCDScomplement44014634402494Downstream
AEC-0003776yjcSCDScomplement44029974404982Downstream
AEC-0003777alsKCDScomplement44052554406184Matches
AEC-0003778alsECDScomplement44061684406863Overlaps Upstream
AEC-0003779alsCCDScomplement44068744407854Upstream
AEC-0003780alsACDScomplement44078334409365Upstream
AEC-0003781alsBCDScomplement44094924410427Upstream
AEC-0003782rpiRCDScomplement44104864411376Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948