Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003778 (alsE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003778 showshow history
Names
alsE ECDH10B_4276
Product
allulose-6-phosphate 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4406168 4406863 696 232
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000056 (IPR000056 Ribulose-phosphate 3-epimerase-like) Jul 2009
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alsE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013382
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4276 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product allulose-6-phosphate 3-epimerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000056 Ribulose-phosphate 3-epimerase-like Protein Sequence Similarity - InterPro Domain: IPR000056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013382 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013382
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004510 alsE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004229 alsE CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006371 alsE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004378 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006882 alsE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004168 yjcU CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010095 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006299 alsE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009205 AlsE CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081298 alsE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006635 alsE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004711 alsE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007064 alsE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013382 alsE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004173 alsE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004483 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004543 alsE CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004690 yjcU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003167 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001168 rpe_2 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4401168 to 4411863
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003774yjcQCDScomplement43994124401463Downstream
AEC-0003775yjcRCDScomplement44014634402494Downstream
AEC-0003776yjcSCDScomplement44029974404982Downstream
AEC-0003777alsKCDScomplement44052554406184Overlaps Downstream
AEC-0003778alsECDScomplement44061684406863Matches
AEC-0003779alsCCDScomplement44068744407854Upstream
AEC-0003780alsACDScomplement44078334409365Upstream
AEC-0003781alsBCDScomplement44094924410427Upstream
AEC-0003782rpiRCDScomplement44104864411376Upstream
AEC-0003783rpiBCDSforward44117354412184Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948