Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003781 (alsB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003781 showshow history
Names
alsB ECDH10B_4279
Product
D-allose transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4409492 4410427 936 312
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001761 (IPR001761 Periplasmic binding protein/LacI sugar binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alsB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013398
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4279 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-allose transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001761 Periplasmic binding protein/LacI sugar binding domain Protein Sequence Similarity - InterPro Domain: IPR001761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013398 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013398
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005305 alsB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005960 alsB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006374 alsB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004382 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006879 alsB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004171 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010091 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006303 alsB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009202 AlsB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081301 alsB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006639 alsB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004714 alsB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007067 alsB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013398 alsB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004176 alsB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004486 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004546 alsB CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004692 yjcX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001171 alsB_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4404492 to 4415427
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003776yjcSCDScomplement44029974404982Downstream
AEC-0003777alsKCDScomplement44052554406184Downstream
AEC-0003778alsECDScomplement44061684406863Downstream
AEC-0003779alsCCDScomplement44068744407854Downstream
AEC-0003780alsACDScomplement44078334409365Downstream
AEC-0003781alsBCDScomplement44094924410427Matches
AEC-0003782rpiRCDScomplement44104864411376Upstream
AEC-0003783rpiBCDSforward44117354412184Upstream
AEC-0004044yjdPCDSforward44122534412582Upstream
AEC-0003784phnPCDScomplement44127294413487Upstream
AEC-0003785phnOCDScomplement44134894413923Upstream
AEC-0003786phnNCDScomplement44139104414467Upstream
AEC-0003787phnMCDScomplement44144674415603Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948