Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003783 (rpiB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003783 showshow history
Names
rpiB ECDH10B_4281
Product
ribose 5-phosphate isomerase B/allose 6-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4411735 4412184 450 150
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003500 (IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family) Jul 2009
Automated Process Approved IPR004785 (IPR004785 Ribose 5-phosphate isomerase B) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003500
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004751 ribose-5-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rpiB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013405
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4281 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribose 5-phosphate isomerase B/allose 6-phosphate isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family Protein Sequence Similarity - InterPro Domain: IPR003500
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004785 Ribose 5-phosphate isomerase B Protein Sequence Similarity - InterPro Domain: IPR004785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013405 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013405
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006098 pentose-phosphate shunt GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003500
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004751 ribose-5-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003370 rpiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003324 rpiB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006376 rpiB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004384 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006877 rpiB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004173 rpiB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010089 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006305 rpiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009200 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081303 rpiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006641 rpiB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004716 rpiB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007069 rpiB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013405 rpiB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004178 rpiB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004489 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004548 rpiB CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004694 rpiB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061098 rpiB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000216 rpiB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001316 rpiB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003193 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001173 rpiB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000910 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234959 rpiB1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005058 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003348 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007142 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004002 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126618 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006456 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005947 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000613 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005929 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004282 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030474 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007391 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000902 rpiB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003599 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004780 rpiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007304 rpiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000821 rpiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000957 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004063 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4406735 to 4417184
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003778alsECDScomplement44061684406863Upstream
AEC-0003779alsCCDScomplement44068744407854Upstream
AEC-0003780alsACDScomplement44078334409365Upstream
AEC-0003781alsBCDScomplement44094924410427Upstream
AEC-0003782rpiRCDScomplement44104864411376Upstream
AEC-0003783rpiBCDSforward44117354412184Matches
AEC-0004044yjdPCDSforward44122534412582Downstream
AEC-0003784phnPCDScomplement44127294413487Downstream
AEC-0003785phnOCDScomplement44134894413923Downstream
AEC-0003786phnNCDScomplement44139104414467Downstream
AEC-0003787phnMCDScomplement44144674415603Downstream
AEC-0003788phnLCDScomplement44156004416280Downstream
AEC-0003789phnKCDScomplement44163914417149Downstream
AEC-0003790phnJCDScomplement44171464417991Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948