Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003803 (proP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003803 showshow history
Names
proP ECDH10B_4303
Product
proline/glycine betaine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4428887 4430389 1503 501
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005828 (IPR005828 Major facilitator, sugar transporter-like) Jul 2009
Automated Process Approved IPR015041 (IPR015041 Osmosensory transporter coiled coil) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR002701 (IPR002701 Chorismate mutase II, prokaryotic-type) Jul 2009
Automated Process Approved IPR004736 (IPR004736 MFS transporter, metabolite:H symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013462
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4303 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product proline/glycine betaine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015041 Osmosensory transporter coiled coil Protein Sequence Similarity - InterPro Domain: IPR015041
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005828 Major facilitator, sugar transporter-like Protein Sequence Similarity - InterPro Domain: IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004736 MFS transporter, metabolite:H symporter Protein Sequence Similarity - InterPro Domain: IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002701 Chorismate mutase II, prokaryotic-type Protein Sequence Similarity - InterPro Domain: IPR002701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013462 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013462
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002323 proP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002156 proP CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015838 ousA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003408 proP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002021 proP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006397 proP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004405 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006857 proP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004193 proP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010066 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006327 proP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005756 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081322 proP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006199 proP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006661 proP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004736 proP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009102 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003172 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008950 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007464 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007109 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006215 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010454 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007125 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008269 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007241 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005820 proP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006567 proP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005964 proP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005089 proP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029287 proP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008518 proP_3 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009039 proP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013462 proP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004200 proP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004509 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004568 proP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135205 proP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003364 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004714 proP CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061799 proP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000890 proP CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000404 proP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008713 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003527 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004909 proP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013445 proP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012713 proP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007805 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008990 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007396 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004030 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005772 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008099 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008981 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008287 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004143 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004103 proP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005314 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004333 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007454 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008607 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006297 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114522 proP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085924 proP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103209 proP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004853 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007522 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005812 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004503 proP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004681 proP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004620 proP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074834 proP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090327 proP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004375 proP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004653 proP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001685 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010312 proP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002069 proP_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002770 proP_3 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002966 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4423887 to 4435389
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003799phnBCDScomplement44236834424126Upstream
AEC-0003800phnACDScomplement44247844425119Upstream
AEC-0003801yjdACDSforward44255204427748Upstream
AEC-0003802yjcZCDSforward44277454428623Upstream
AEC-0003803proPCDSforward44288874430389Matches
AEC-0003804basSCDScomplement44305664431657Downstream
AEC-0003805basRCDScomplement44316674432335Downstream
AEC-0003806eptACDScomplement44323324433975Downstream
AEC-0003807adiCCDScomplement44340794435416Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948