Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003809 (melA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003809 showshow history
Names
melA ECDH10B_4311
Product
alpha-galactosidase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4440296 4441651 1356 452
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001088 (IPR001088 Glycoside hydrolase, family 4) Jul 2009
Automated Process Approved IPR015955 (IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name melA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013493
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4311 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alpha-galactosidase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001088 Glycoside hydrolase, family 4 Protein Sequence Similarity - InterPro Domain: IPR001088
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013493 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013493
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002962 melA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003092 melA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006405 melA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004413 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006847 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004201 melA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010057 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006335 melA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005748 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081330 melA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006207 melA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006669 melA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004744 melA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009110 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003181 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008959 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007473 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007118 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006206 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010463 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007133 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008277 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007250 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005828 melA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006576 melA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005956 melA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005098 melA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029295 melA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008527 melA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009048 melA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013493 melA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004208 melA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004517 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004577 melA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135213 melA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003374 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004722 melA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008723 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003519 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004917 melA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008932 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013481 melA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012747 melA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007797 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008998 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007404 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004038 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005780 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008107 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008989 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008295 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004151 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004111 melA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005325 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004341 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007446 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008615 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006305 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114543 melA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085932 melA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103242 melA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004845 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007514 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005820 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004511 melA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004689 melA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004609 melA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074843 melA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090319 melA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004367 melA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004661 melA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001131 melA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4435296 to 4446651
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003807adiCCDScomplement44340794435416Upstream
AEC-0003808melRCDScomplement44391054440013Upstream
AEC-0003809melACDSforward44402964441651Matches
AEC-0003810melBCDSforward44417544443175Downstream
AEC-0003811yjdFCDScomplement44433144443943Downstream
AEC-0003812fumBCDScomplement44440654445711Downstream
AEC-0003813dcuBCDScomplement44457894447129Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948