Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003810 (melB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003810 showshow history
Names
melB ECDH10B_4312
Product
melibiose:sodium symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4441754 4443175 1422 474

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Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR001927 (IPR001927 Sodium:galactoside symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name melB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013495
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4312 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product melibiose:sodium symporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001927 Sodium:galactoside symporter Protein Sequence Similarity - InterPro Domain: IPR001927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated comment The coordinates of this feature have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted in Escherichia coli K-12 MG1655 (ASAP:ABE-0013495), adding 4 codons to the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Oct 2013
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013495 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013495
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002788 melB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003073 melB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006406 melB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006846 melB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010056 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006336 melB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005744 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006208 melB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006670 melB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009111 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003182 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008960 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007474 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007119 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006205 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010464 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007134 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008278 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007251 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005829 melB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006577 melB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005955 melB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005099 melB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029296 melB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009049 melB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013495 melB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004209 melB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004518 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004578 melB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135214 melB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003375 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008724 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003518 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004918 melB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008933 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013484 melB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012750 melB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007796 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008999 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007405 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004039 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005781 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008108 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008990 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008296 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004152 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004112 melB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005326 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004342 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007445 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008616 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006306 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114546 melB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085933 melB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103245 melB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004844 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007513 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005821 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004690 melB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074844 melB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090318 melB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004366 melB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001130 melB2_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4436754 to 4448175
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003808melRCDScomplement44391054440013Upstream
AEC-0003809melACDSforward44402964441651Upstream
AEC-0003810melBCDSforward44417544443175Matches
AEC-0003811yjdFCDScomplement44433144443943Downstream
AEC-0003812fumBCDScomplement44440654445711Downstream
AEC-0003813dcuBCDScomplement44457894447129Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948