Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003813 (dcuB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003813 showshow history
Names
dcuB ECDH10B_4315
Product
C4-dicarboxylate antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4445789 4447129 1341 447
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004668 (IPR004668 Anaerobic c4-dicarboxylate membrane transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dcuB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013503
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4315 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product C4-dicarboxylate antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004668 Anaerobic c4-dicarboxylate membrane transporter Protein Sequence Similarity - InterPro Domain: IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013503 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013503
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002252 dcuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002233 dcuB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018628 dcuB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001935 dcuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006409 dcuB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004416 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006843 dcuB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004204 dcuB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010052 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006339 dcuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005741 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081334 dcuB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006211 dcuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006673 dcuB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004747 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003185 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008963 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007477 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007122 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006202 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010467 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007137 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008281 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007254 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005832 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006580 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005952 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005102 dcuB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029299 dcuB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008530 dcuB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009052 dcuB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013503 dcuB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004212 dcuB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004521 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004581 dcuB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135217 dcuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003378 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004725 dcuB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061786 dcuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000875 dcuB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000399 dcuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001811 dcuB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008726 dcuB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003506 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004922 dcuB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008935 dcuB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013492 dcuB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007794 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009001 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007407 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004041 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005783 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008110 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008992 dcuB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008298 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004154 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004114 dcuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005328 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004344 dcuB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007443 dcuB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008618 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006308 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114552 dcuB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085935 dcuB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103252 dcuB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004842 dcuB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007511 dcuB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005823 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004711 dcuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004693 dcuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004770 dcuB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074848 dcuB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090315 dcuB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004363 dcuB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004669 dcuB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003060 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002615 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003991 dcuB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003728 dcuB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003297 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007231 dcuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000886 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001037 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003982 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4440789 to 4452129
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003809melACDSforward44402964441651Downstream
AEC-0003810melBCDSforward44417544443175Downstream
AEC-0003811yjdFCDScomplement44433144443943Downstream
AEC-0003812fumBCDScomplement44440654445711Downstream
AEC-0003813dcuBCDScomplement44457894447129Matches
AEC-0003814dcuSCDScomplement44484164450047Upstream
AEC-0003815yjdICDSforward44502284450458Upstream
AEC-0003816yjdJCDSforward44504704450742Upstream
AEC-0003817yjdKCDSforward44509694451265Upstream
AEC-0004100yjdOCDSforward44512934451466Upstream
AEC-0003818lysUCDScomplement44515854453102Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948