Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003821 (cadB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003821 showshow history
Names
cadB ECDH10B_4325
Product
predicted lysine/cadaverine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4457082 4458416 1335 445
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004754 (IPR004754 Amino acid antiporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cadB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013530
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4325 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted lysine/cadaverine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004754 Amino acid antiporter Protein Sequence Similarity - InterPro Domain: IPR004754
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013530 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013530
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002993 cadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003072 cadB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001508 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006420 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004427 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006832 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004212 cadB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010041 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006350 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005730 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081347 cadB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006222 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006684 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004756 cadB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009124 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003195 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008974 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007488 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007133 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006191 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010478 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007148 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008292 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007266 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005843 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006591 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005941 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005113 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029309 cadB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008542 cadB_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009061 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013530 cadB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004222 cadB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004532 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004593 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135226 cadB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003388 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004738 cadB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006884 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000331 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002992 cadB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007195 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008261 cadB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007840 cadB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005955 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007183 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007067 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006990 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006550 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006326 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007121 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008014 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000310 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000308 cadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000376 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007363 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004818 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006874 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007517 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110951 cadB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082010 cadB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098117 cadB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006710 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007711 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006893 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075887 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090495 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004557 cadB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4452082 to 4463416
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003818lysUCDScomplement44515854453102Downstream
AEC-0003819yjdLCDScomplement44533394454796Downstream
AEC-0003820cadACDScomplement44548554457002Downstream
AEC-0003821cadBCDScomplement44570824458416Matches
AEC-0003822cadCCDScomplement44587814460319Upstream
AEC-0004188pheUtRNAcomplement44609364461011Upstream
AEC-0003823yjdCCDScomplement44611184461693Upstream
AEC-0003824dipZCDScomplement44617304463427Upstream
AEC-0003825cutACDScomplement44634034463741Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948