Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003826 (dcuA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003826 showshow history
Names
dcuA ECDH10B_4331
Product
C4-dicarboxylate antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4463857 4465158 1302 434
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004668 (IPR004668 Anaerobic c4-dicarboxylate membrane transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dcuA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013546
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4331 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product C4-dicarboxylate antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004668 Anaerobic c4-dicarboxylate membrane transporter Protein Sequence Similarity - InterPro Domain: IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013546 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013546
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004668
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001430 dcuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001495 dcuA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018664 dcuA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003091 dcuA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001119 dcuA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006426 dcuA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004434 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006823 dcuA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004282 dcuA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010018 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008624 dcuA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005724 dcuA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081431 dcuA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006228 dcuA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009649 dcuA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004762 dcuA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009130 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003200 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008980 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007494 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007139 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006185 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010484 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007154 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008298 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007272 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005849 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006598 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010061 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005119 dcuA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029315 dcuA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008548 dcuA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009067 dcuA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013546 dcuA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004538 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004599 dcuA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135232 dcuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003393 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004744 dcuA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060845 dcuA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002737 dcuA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001342 dcuA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000939 dcuA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008763 dcuA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003467 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004961 dcuA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008960 dcuA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013551 dcuA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012814 dcuA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007768 dcuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009097 dcuA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008471 dcuA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004069 dcuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005821 dcuA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008148 dcuA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009031 dcuA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008328 dcuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004176 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004136 dcuA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004383 dcuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008657 dcuA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006346 dcuA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114798 dcuA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086102 dcuA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103317 dcuA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004813 dcuA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008706 dcuA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008835 dcuA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004701 dcuA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010086 dcuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007605 dcuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005022 dcuA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075895 dcuA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090502 dcuA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004565 dcuA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004694 dcuA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001975 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001097 b4138 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002860 b4138 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003030 dcuA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003036 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235367 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004831 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004697 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008140 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002964 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116482 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008372 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006940 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003516 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005639 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004033 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030231 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004783 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003998 dcuA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004359 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006905 dcuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007705 dcuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000433 dcuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000501 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004541 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4458857 to 4470158
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003822cadCCDScomplement44587814460319Downstream
AEC-0004188pheUtRNAcomplement44609364461011Downstream
AEC-0003823yjdCCDScomplement44611184461693Downstream
AEC-0003824dipZCDScomplement44617304463427Downstream
AEC-0003825cutACDScomplement44634034463741Downstream
AEC-0003826dcuACDScomplement44638574465158Matches
AEC-0003827aspACDScomplement44652764466712Upstream
AEC-0003828fxsACDSforward44670494467525Upstream
AEC-0003829yjeHCDScomplement44675414468797Upstream
AEC-0003830groSCDSforward44690734469366Upstream
AEC-0003831groLCDSforward44694104471056Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948