Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003839 (frdC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003839 showshow history
Names
frdC ECDH10B_4347
Product
fumarate reductase (anaerobic), membrane anchor subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4477762 4478157 396 132
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003510 (IPR003510 Fumarate reductase, subunit C) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frdC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013598
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4347 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fumarate reductase (anaerobic), membrane anchor subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003510 Fumarate reductase, subunit C Protein Sequence Similarity - InterPro Domain: IPR003510
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013598 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013598
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003510
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001833 frdC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001919 frdC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017839 frdC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001109 frdC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006442 frdC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004450 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006807 frdC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004296 frdC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009996 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008640 frdC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005706 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081451 frdC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006246 frdC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009665 frdC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004778 frdC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009148 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003219 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008995 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007509 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007155 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006170 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010500 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007169 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008313 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007288 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005865 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006615 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010045 frdC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005135 frdC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029331 frdC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008564 frdC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009084 frdC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013598 frdC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004244 frdC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004555 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004615 frdC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135246 frdC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003412 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004761 frdC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064290 frdC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002282 frdC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002199 frdC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003850 frdC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008779 frdC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003449 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004978 frdC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008977 frdC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013612 frdC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012870 frdC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007752 frdC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009113 frdC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008455 frdC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004086 frdC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005837 frdC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008165 frdC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009047 frdC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008344 frdC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004193 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004153 frdC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005497 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004399 frdC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008612 frdC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008673 frdC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006363 frdC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114831 frdC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086119 frdC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103361 frdC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004797 frdC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008690 frdC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008819 frdC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004687 frdC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010103 frdC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007621 frdC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004968 frdC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075914 frdC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090520 frdC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004583 frdC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004712 frdC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001986 frdC CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001133 b4152 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002871 frdC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003041 frdC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003047 frdC CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235399 frdC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004821 frdC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004686 frdC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008130 frdC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002953 frdC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116527 frdC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008362 frdC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006925 frdC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003396 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005651 frdC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004043 frdC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030241 frdC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004771 frdC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003987 frdC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004348 frdC CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006895 frdC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007695 frdC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000443 frdC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000512 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004529 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4472762 to 4483157
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003834efpCDSforward44740844474650Downstream
AEC-0004008ecnACDSforward44747024474827Downstream
AEC-0004009ecnBCDSforward44749384475084Downstream
AEC-0003835sugECDSforward44752604475577Downstream
AEC-0003836blcCDScomplement44755744476107Downstream
AEC-0003837ampCCDScomplement44761964477329Downstream
AEC-0003838frdDCDScomplement44773924477751Downstream
AEC-0003839frdCCDScomplement44777624478157Matches
AEC-0003840frdACDScomplement44788954480703Upstream
AEC-0003841poxACDSforward44810284482005Upstream
AEC-0003842yjeMCDSforward44822244483726Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948