Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003840 (frdA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003840 showshow history
Names
frdA ECDH10B_4349
Product
fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4478895 4480703 1809 603
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Jul 2009
Automated Process Approved IPR004112 (IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal) Jul 2009
Automated Process Approved IPR003952 (IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site) Jul 2009
Automated Process Approved IPR015939 (IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR005884 (IPR005884 Fumarate reductase, flavoprotein subunit) Jul 2009
Automated Process Approved IPR014006 (IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009061 anaerobic respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013604
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4349 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site Protein Sequence Similarity - InterPro Domain: IPR003952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015939
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Protein Sequence Similarity - InterPro Domain: IPR014006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005884 Fumarate reductase, flavoprotein subunit Protein Sequence Similarity - InterPro Domain: IPR005884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004112
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013604 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013604
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009061 anaerobic respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005884
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001817 frdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001876 frdA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017842 frdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001107 frdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006444 frdA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004452 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006805 frdA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004299 frdA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009993 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008642 frdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005704 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081453 frdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006248 frdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009667 frdA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004780 frdA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009150 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003221 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008997 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007511 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007157 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006168 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010502 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007171 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008315 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007290 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005867 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006617 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010043 frdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005137 frdA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029333 frdA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008566 frdA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009086 frdA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013604 frdA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004246 frdA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004557 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004617 frdA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135248 frdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003414 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004763 frdA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064288 frdA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002283 frdA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002197 frdA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003848 frdA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008781 frdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003447 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004980 frdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008979 frdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013620 frdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012878 frdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007750 frdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009115 frdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008453 frdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004088 frdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005839 frdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008167 frdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009049 frdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008346 frdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004195 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004155 frdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005499 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004401 frdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008610 frdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008675 frdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006365 frdA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114838 frdA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086121 frdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103366 frdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004795 frdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008688 frdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008817 frdA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004685 frdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010105 frdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007623 frdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004970 frdA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075916 frdA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090522 frdA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004585 frdA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004714 frdA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001988 frdA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001141 b4154 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002873 frdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003043 frdA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003049 frdA CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235404 frdA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004819 frdA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004683 frdA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008128 frdA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002951 frdA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116537 frdA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008360 frdA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006923 frdA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003394 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005653 frdA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004045 frdA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030243 frdA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004769 frdA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003984 frdA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004345 frdA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006893 frdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007693 frdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000445 frdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000514 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004526 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4473895 to 4485703
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003834efpCDSforward44740844474650Downstream
AEC-0004008ecnACDSforward44747024474827Downstream
AEC-0004009ecnBCDSforward44749384475084Downstream
AEC-0003835sugECDSforward44752604475577Downstream
AEC-0003836blcCDScomplement44755744476107Downstream
AEC-0003837ampCCDScomplement44761964477329Downstream
AEC-0003838frdDCDScomplement44773924477751Downstream
AEC-0003839frdCCDScomplement44777624478157Downstream
AEC-0003840frdACDScomplement44788954480703Matches
AEC-0003841poxACDSforward44810284482005Upstream
AEC-0003842yjeMCDSforward44822244483726Upstream
AEC-0003843yjeNCDSforward44837784484092Upstream
AEC-0003844yjeOCDSforward44840894484403Upstream
AEC-0003845yjePCDScomplement44844324487755Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948