Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003846 (psd) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003846 showshow history
Names
psd ECDH10B_4355
Product
phosphatidylserine decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4487777 4488745 969 323
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003817 (IPR003817 Phosphatidylserine decarboxylase-related) Jul 2009
Automated Process Approved IPR005221 (IPR005221 (DEPRECATED) Phosphatidylserine decarboxylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004609 phosphatidylserine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name psd Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013623
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4355 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphatidylserine decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003817 Phosphatidylserine decarboxylase-related Protein Sequence Similarity - InterPro Domain: IPR003817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005221 (DEPRECATED) Phosphatidylserine decarboxylase Protein Sequence Similarity - InterPro Domain: IPR005221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013623 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013623
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004609 phosphatidylserine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000614 psd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000366 psd CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017847 psd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003079 psd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001101 psd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006448 psd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004456 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006798 psd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005409 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009984 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008646 psd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005700 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081458 psd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006255 psd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009671 psd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004784 psd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009154 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003227 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009001 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007515 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007161 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010506 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007175 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008319 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007294 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005871 psd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006621 psd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010039 psd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005141 psd CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029338 psd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008570 psd CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009090 psd CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013623 psd CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004252 psd CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004561 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004623 psd CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135252 psd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003420 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004769 psd CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064285 psd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003898 psd CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004230 psd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003845 psd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008786 psd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003440 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004985 psd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008984 psd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013641 psd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012899 psd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007745 psd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009120 psd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008448 psd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004092 psd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005844 psd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008172 psd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009054 psd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008351 psd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004200 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004160 psd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004406 psd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008605 psd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008679 psd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006369 psd CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114851 psd CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086126 psd CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103387 psd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004790 psd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008683 psd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008812 psd CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004679 psd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010111 psd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007629 psd CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005009 psd CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075922 psd CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090527 psd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004589 psd CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004720 psd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001991 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001154 psd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002876 psd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003714 psd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002453 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235421 psd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004815 psd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004679 psd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008125 psd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002947 psd CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116559 psd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008357 psd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006920 psd CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003391 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005657 psd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004048 psd CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030246 psd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004765 psd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003979 psd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004341 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006890 psd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007689 psd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000448 psd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000519 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004522 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4482777 to 4493745
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003842yjeMCDSforward44822244483726Downstream
AEC-0003843yjeNCDSforward44837784484092Downstream
AEC-0003844yjeOCDSforward44840894484403Downstream
AEC-0003845yjePCDScomplement44844324487755Downstream
AEC-0003846psdCDScomplement44877774488745Matches
AEC-0003847rsgACDScomplement44888424489894Upstream
AEC-0003848ornCDSforward44899894490534Upstream
AEC-0004189glyVtRNAforward44907454490820Upstream
AEC-0004190glyXtRNAforward44908574490932Upstream
AEC-0004191glyYtRNAforward44909684491043Upstream
AEC-0003849yjeSCDScomplement44913134492452Upstream
AEC-0003850yjeFCDSforward44924514493998Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948