Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003847 (rsgA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003847 showshow history
Names
rsgA ECDH10B_4356
Product
ribosome small subunit-dependent GTPase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4488842 4489894 1053 351
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004881 (IPR004881 Ribosome biogenesis GTPase RsgA) Jul 2009
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Automated Process Approved IPR010914 (IPR010914 RsgA GTPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rsgA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013626
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4356 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribosome small subunit-dependent GTPase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010914 RsgA GTPase domain Protein Sequence Similarity - InterPro Domain: IPR010914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004881 Ribosome biogenesis GTPase RsgA Protein Sequence Similarity - InterPro Domain: IPR004881
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013626 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013626
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004881
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000995 rsgA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000842 rsgA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017848 rsgA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003078 engC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001100 rsgA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006449 rsgA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004457 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006797 rsgA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004306 yjeQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009983 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008647 rsgA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005699 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081459 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006256 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009672 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004785 rsgA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009155 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003228 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009002 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007516 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007162 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006163 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010507 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007176 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008320 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007295 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005872 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006622 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010038 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005142 rsgA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029339 rsgA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008571 rsgA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009091 rsgA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013626 rsgA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004253 rsgA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004562 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004624 rsgA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135253 rsgA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003421 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004770 yjeQ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064284 rsgA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002288 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002196 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003844 rsgA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008787 rsgA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003438 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004986 yjeQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008985 rsgA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013643 yjeQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012901 yjeQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007744 rsgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009121 rsgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008447 rsgA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004093 rsgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005845 rsgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008173 rsgA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009055 rsgA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008352 rsgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004201 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004161 rsgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005507 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004407 rsgA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008604 rsgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008680 rsgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006370 rsgA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114852 rsgA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086127 rsgA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103389 rsgA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004789 rsgA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008682 rsgA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008811 rsgA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004678 yjeQ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010112 rsgA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007630 rsgA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005008 yjeQ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075923 rsgA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090528 rsgA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004590 yjeQ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004721 rsgA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001992 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001156 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002877 rsgA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003713 rsgA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002452 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235422 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004814 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004678 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008124 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002946 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116560 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008356 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006919 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005658 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004049 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030248 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004764 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003978 rsgA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004339 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006889 rsgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007688 rsgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000449 rsgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000520 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004521 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4483842 to 4494894
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003843yjeNCDSforward44837784484092Downstream
AEC-0003844yjeOCDSforward44840894484403Downstream
AEC-0003845yjePCDScomplement44844324487755Downstream
AEC-0003846psdCDScomplement44877774488745Downstream
AEC-0003847rsgACDScomplement44888424489894Matches
AEC-0003848ornCDSforward44899894490534Upstream
AEC-0004189glyVtRNAforward44907454490820Upstream
AEC-0004190glyXtRNAforward44908574490932Upstream
AEC-0004191glyYtRNAforward44909684491043Upstream
AEC-0003849yjeSCDScomplement44913134492452Upstream
AEC-0003850yjeFCDSforward44924514493998Upstream
AEC-0003851yjeECDSforward44939704494431Upstream
AEC-0003852amiBCDSforward44944504495787Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948