Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003876 (ulaA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003876 showshow history
Names
ulaA ECDH10B_4388
Product
L-ascorbate-specific enzyme IIC component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4518365 4519762 1398 466
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007333 (IPR007333 (DEPRECATED) Putative sugar-specific permease, SgaT/UlaA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013723
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4388 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-ascorbate-specific enzyme IIC component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007333 (DEPRECATED) Putative sugar-specific permease, SgaT/UlaA Protein Sequence Similarity - InterPro Domain: IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013723 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013723
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002722 ulaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002875 ulaA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001072 ulaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008856 ulaA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004490 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006767 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004335 sgaT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009947 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006113 ulaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005666 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081494 ulaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009530 ulaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009973 ulaA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004817 ulaA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009190 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003258 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009034 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007548 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007193 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009565 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010539 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006733 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008352 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006710 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005904 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006046 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009558 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005174 ulaA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029371 ulaA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005774 ulaA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009125 ulaA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013723 ulaA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004285 ulaA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004595 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004656 ulaA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135285 ulaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001207 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004802 sgaT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008821 ulaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003406 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005025 sgaT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009019 ulaA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013747 sgaT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012995 sgaT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007709 ulaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009155 ulaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008743 ulaA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004128 ulaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005879 ulaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008207 ulaA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009089 ulaA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006290 ulaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004233 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004195 sgaT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005542 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004442 ulaA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008789 ulaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008713 ulaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008815 ulaA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114916 sgaT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086160 sgaT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103487 sgaT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004755 ulaA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008645 ulaA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009040 ulaA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004643 sgaT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007437 ulaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004929 sgaT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075961 sgaT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090561 sgaT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004622 sgaT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002649 ulaA_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4513365 to 4524762
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003870aidBCDSforward45126604514285Upstream
AEC-0003871yjfNCDScomplement45144024514677Upstream
AEC-0003872yjfOCDScomplement45148264515155Upstream
AEC-0003873yjfPCDSforward45153374516086Upstream
AEC-0003874ulaRCDScomplement45160834516838Upstream
AEC-0003875ulaGCDScomplement45169464518010Upstream
AEC-0003876ulaACDSforward45183654519762Matches
AEC-0003877ulaBCDSforward45197784520083Downstream
AEC-0003878ulaCCDSforward45200934520557Downstream
AEC-0003879ulaDCDSforward45205714521221Downstream
AEC-0003880ulaECDSforward45212314522085Downstream
AEC-0003881ulaFCDSforward45220854522771Downstream
AEC-0003882yjfYCDScomplement45229014523176Downstream
AEC-0003883rpsFCDSforward45235034523898Downstream
AEC-0003884rpsRCDSforward45242244524451Downstream
AEC-0003885rplICDSforward45244934524942Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948