Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003877 (ulaB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003877 showshow history
Names
ulaB ECDH10B_4389
Product
L-ascorbate-specific enzyme IIB component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4519778 4520083 306 102
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013011 (IPR013011 Phosphotransferase system, EIIB component, type 2) Jul 2009
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013725
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4389 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-ascorbate-specific enzyme IIB component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013011 Phosphotransferase system, EIIB component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013725 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013725
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002878 ulaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003082 ulaB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008855 ulaB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004491 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006766 sgaB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005411 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009946 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006112 ulaB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005665 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081496 ulaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009529 ulaB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009974 ulaB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004818 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003259 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009035 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007549 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007194 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009564 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010540 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006732 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008353 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006711 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005905 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006047 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009559 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005175 ulaB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029372 ulaB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005773 ulaB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009126 ulaB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013725 ulaB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004286 ulaB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004596 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004657 ulaB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135286 ulaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001208 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004803 sgaB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008822 ulaB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003405 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005026 sgaB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013752 sgaB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012999 sgaB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007708 ulaB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009156 ulaB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008744 ulaB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004129 ulaB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005880 ulaB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008208 ulaB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009090 ulaB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006289 ulaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004234 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004196 sgaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005543 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004443 ulaB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008788 ulaB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008714 ulaB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008816 ulaB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114917 sgaB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103490 sgaB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004754 ulaB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008644 ulaB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009041 ulaB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004642 sgaB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010143 ulaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007438 ulaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004930 sgaB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075962 sgaB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090562 sgaB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004623 sgaB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004752 ulaB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4514778 to 4525083
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003872yjfOCDScomplement45148264515155Upstream
AEC-0003873yjfPCDSforward45153374516086Upstream
AEC-0003874ulaRCDScomplement45160834516838Upstream
AEC-0003875ulaGCDScomplement45169464518010Upstream
AEC-0003876ulaACDSforward45183654519762Upstream
AEC-0003877ulaBCDSforward45197784520083Matches
AEC-0003878ulaCCDSforward45200934520557Downstream
AEC-0003879ulaDCDSforward45205714521221Downstream
AEC-0003880ulaECDSforward45212314522085Downstream
AEC-0003881ulaFCDSforward45220854522771Downstream
AEC-0003882yjfYCDScomplement45229014523176Downstream
AEC-0003883rpsFCDSforward45235034523898Downstream
AEC-0003884rpsRCDSforward45242244524451Downstream
AEC-0003885rplICDSforward45244934524942Downstream
AEC-0003886yjfZCDScomplement45250134525807Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948