Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003880 (ulaE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003880 showshow history
Names
ulaE ECDH10B_4392
Product
L-xylulose 5-phosphate 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4521231 4522085 855 285
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004560 (IPR004560 L-ribulose-5-phosphate 3-epimerase) Jul 2009
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2009
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013732
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4392 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-xylulose 5-phosphate 3-epimerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004560 L-ribulose-5-phosphate 3-epimerase Protein Sequence Similarity - InterPro Domain: IPR004560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013732 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013732
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002763 ulaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003003 ulaE CDS
Ortholog
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0001068 ulaE CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008852 ulaE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004494 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0006763 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004339 ulaE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009943 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0006109 ulaE CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0005662 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081500 ulaE CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0009526 ulaE CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009977 ulaE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004821 ulaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009195 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0003263 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0009038 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0007552 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007197 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009561 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010543 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0006729 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0008356 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006714 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0005908 ulaE CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0006050 ulaE CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0009562 ulaE CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0005178 ulaE CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029375 ulaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005770 ulaE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009129 ulaE CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0013732 ulaE CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0004289 ulaE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004599 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004660 ulaE CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0135289 ulaE CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0001212 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004806 sgaU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004640 sgaU CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0008825 ulaE CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0003401 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005029 sgaU CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0009023 ulaE CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0013760 sgaU CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0013007 sgaU CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007705 ulaE CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0009159 ulaE CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0008747 ulaE CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0004132 ulaE CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0005883 ulaE CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0008211 ulaE CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0009093 ulaE CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0006286 ulaE CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0004237 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004199 sgaU CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0005546 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0004446 ulaE CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0008785 ulaE CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0008717 ulaE CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008819 ulaE CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0114922 sgaU CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0086164 sgaU CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103499 sgaU CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0004751 ulaE CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0008641 ulaE CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0009044 ulaE CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0004639 sgaU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010146 ulaE CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007441 ulaE CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075965 sgaU CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0090565 sgaU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004626 sgaU CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004755 ulaE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4516231 to 4527085
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003874ulaRCDScomplement45160834516838Upstream
AEC-0003875ulaGCDScomplement45169464518010Upstream
AEC-0003876ulaACDSforward45183654519762Upstream
AEC-0003877ulaBCDSforward45197784520083Upstream
AEC-0003878ulaCCDSforward45200934520557Upstream
AEC-0003879ulaDCDSforward45205714521221Upstream
AEC-0003880ulaECDSforward45212314522085Matches
AEC-0003881ulaFCDSforward45220854522771Overlaps Downstream
AEC-0003882yjfYCDScomplement45229014523176Downstream
AEC-0003883rpsFCDSforward45235034523898Downstream
AEC-0003884rpsRCDSforward45242244524451Downstream
AEC-0003885rplICDSforward45244934524942Downstream
AEC-0003886yjfZCDScomplement45250134525807Downstream
AEC-0003887ytfACDSforward45261544526480Downstream
AEC-0003888ytfBCDScomplement45264644527102Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948