Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003881 (ulaF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003881 showshow history
Names
ulaF ECDH10B_4393
Product
L-ribulose 5-phosphate 4-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4522085 4522771 687 229
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001303 (IPR001303 Class II aldolase/adducin N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ulaF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013734
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4393 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product L-ribulose 5-phosphate 4-epimerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR001303 Class II aldolase/adducin N-terminal Protein Sequence Similarity - InterPro Domain: IPR001303
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013734 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013734
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002740 ulaF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002930 ulaF CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001067 ulaF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008851 ulaF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004495 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006762 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004340 sgaE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009942 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006108 ulaF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005661 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081501 ulaF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009525 ulaF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009978 ulaF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004822 ulaF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009196 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003264 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009039 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007553 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007198 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009560 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010544 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006728 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008357 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006715 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005909 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006051 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009563 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005179 ulaF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029376 ulaF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005769 ulaF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009130 ulaF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013734 ulaF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004290 ulaF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004600 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004661 ulaF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135290 ulaF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001213 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004807 sgaE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008826 ulaF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003400 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005030 sgaE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009024 ulaF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013762 sgaE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013009 sgaE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007704 ulaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009160 ulaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008748 ulaF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004133 ulaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005884 ulaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008212 ulaF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009094 ulaF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006285 ulaF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004238 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004200 sgaE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005547 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004447 ulaF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008784 ulaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008718 ulaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008820 ulaF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114923 sgaE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086165 sgaE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103502 sgaE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004750 ulaF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008640 ulaF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009045 ulaF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010147 ulaF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007442 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004934 sgaE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075966 sgaE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090566 sgaE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004627 sgaE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004756 ulaF CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4517085 to 4527771
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003875ulaGCDScomplement45169464518010Upstream
AEC-0003876ulaACDSforward45183654519762Upstream
AEC-0003877ulaBCDSforward45197784520083Upstream
AEC-0003878ulaCCDSforward45200934520557Upstream
AEC-0003879ulaDCDSforward45205714521221Upstream
AEC-0003880ulaECDSforward45212314522085Overlaps Upstream
AEC-0003881ulaFCDSforward45220854522771Matches
AEC-0003882yjfYCDScomplement45229014523176Downstream
AEC-0003883rpsFCDSforward45235034523898Downstream
AEC-0003884rpsRCDSforward45242244524451Downstream
AEC-0003885rplICDSforward45244934524942Downstream
AEC-0003886yjfZCDScomplement45250134525807Downstream
AEC-0003887ytfACDSforward45261544526480Downstream
AEC-0003888ytfBCDScomplement45264644527102Downstream
AEC-0003889fklBCDSforward45273204527940Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948