Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003890 (cycA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003890 showshow history
Names
cycA ECDH10B_4403
Product
D-alanine/D-serine/glycine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4528249 4529661 1413 471
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Automated Process Approved IPR004840 (IPR004840 Amino acid permease, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cycA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013764
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4403 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product D-alanine/D-serine/glycine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR004840 Amino acid permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR004840
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013764 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013764
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001364 cycA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001073 cycA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020517 cycA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002150 cycA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001053 cycA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007006 cycA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004514 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006745 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004357 cycA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009921 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006092 cycA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007481 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081520 cycA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008364 cycA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007291 cycA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004841 cycA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009213 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003279 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009050 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007564 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007208 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009207 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010555 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006718 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008368 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006726 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005919 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006062 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005533 cycA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005189 cycA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029389 cycA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005752 cycA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009146 cycA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013764 cycA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004300 cycA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004618 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004677 cycA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135303 cycA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001227 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004826 cycA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063165 cycA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000960 cycA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001933 cycA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001558 cycA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008836 cycA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003387 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005040 cycA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009033 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013792 cycA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013039 cycA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007045 cycA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009170 cycA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007751 cycA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004143 cycA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007120 cycA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008222 cycA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009104 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006276 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004248 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004210 cycA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005558 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004456 cycA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006616 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008728 cycA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004057 cycA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114946 cycA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086175 cycA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103532 cycA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004741 cycA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007458 cycA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005515 cycA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004613 cycA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010168 cycA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006604 cycA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004947 cycA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075876 cycA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090487 cycA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004547 cycA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004770 cycA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001842 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005731 cycA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000320 cycA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000384 cycA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003463 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237936 cycA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006158 cycA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001497 cycA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004331 cycA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001561 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121452 cycA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007302 cycA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006155 cycA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001801 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008132 cycA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006994 cycA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032173 cycA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006143 cycA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002723 cycA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001516 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007332 cycA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006237 cycA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001806 cycA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002205 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002800 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4523249 to 4534661
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003883rpsFCDSforward45235034523898Upstream
AEC-0003884rpsRCDSforward45242244524451Upstream
AEC-0003885rplICDSforward45244934524942Upstream
AEC-0003886yjfZCDScomplement45250134525807Upstream
AEC-0003887ytfACDSforward45261544526480Upstream
AEC-0003888ytfBCDScomplement45264644527102Upstream
AEC-0003889fklBCDSforward45273204527940Upstream
AEC-0003890cycACDSforward45282494529661Matches
AEC-0003891ytfECDScomplement45297064530368Downstream
AEC-0003892ytfFCDScomplement45304764531441Downstream
AEC-0003893ytfGCDScomplement45315494532409Downstream
AEC-0003894ytfHCDSforward45324984532878Downstream
AEC-0003895cpdBCDScomplement45330074534950Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948