Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003891 (ytfE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003891 showshow history
Names
ytfE ECDH10B_4404
Product
predicted regulator of cell morphogenesis and cell wall metabolism
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4529706 4530368 663 221
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007500 (IPR007500 (DEPRECATED) Domain of unknown function DUF542, ScdA N-terminal) Jul 2009
Automated Process Approved IPR012312 (IPR012312 Haemerythrin-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ytfE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013766
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4404 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted regulator of cell morphogenesis and cell wall metabolism Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007500 (DEPRECATED) Domain of unknown function DUF542, ScdA N-terminal Protein Sequence Similarity - InterPro Domain: IPR007500
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012312 Haemerythrin-like Protein Sequence Similarity - InterPro Domain: IPR012312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013766 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013766
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002188 ytfE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002223 ytfE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046738 ytfE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001048 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007005 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004515 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006744 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004358 ytfE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009920 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006091 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007482 RIC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081521 ytfE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008363 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007292 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004842 ytfE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009215 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003280 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009051 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007565 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009206 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010556 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006717 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008369 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006727 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005920 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006063 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005534 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005190 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029390 ytfE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005751 ytfE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009151 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013766 ytfE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004301 ytfE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004619 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004680 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135304 ytfE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001228 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004827 ytfE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063920 ytfE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002093 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002109 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004043 ytfE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008837 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003386 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005043 ytfE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009036 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013802 ytfE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013049 ytfE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007044 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009171 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007750 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004144 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007121 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008223 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009107 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006273 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004251 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004213 ytfE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005562 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004457 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006615 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008729 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004058 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114951 ytfE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086178 ytfE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103534 ytfE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004740 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007457 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005516 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004612 ytfE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010169 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006603 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004948 ytfE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075875 ytfE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090486 ytfE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004546 ytfE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004771 ytfE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000967 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002100 ytfE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002582 ytfE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002423 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235474 ytfE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008079 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000104 ytfE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008089 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003709 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127216 ytfE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007831 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008528 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006792 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004084 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030282 ytfE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006488 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003941 ytfE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004305 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007447 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007655 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000480 ytfE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000557 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004483 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4524706 to 4535368
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003885rplICDSforward45244934524942Downstream
AEC-0003886yjfZCDScomplement45250134525807Downstream
AEC-0003887ytfACDSforward45261544526480Downstream
AEC-0003888ytfBCDScomplement45264644527102Downstream
AEC-0003889fklBCDSforward45273204527940Downstream
AEC-0003890cycACDSforward45282494529661Downstream
AEC-0003891ytfECDScomplement45297064530368Matches
AEC-0003892ytfFCDScomplement45304764531441Upstream
AEC-0003893ytfGCDScomplement45315494532409Upstream
AEC-0003894ytfHCDSforward45324984532878Upstream
AEC-0003895cpdBCDScomplement45330074534950Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948