Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003895 (cpdB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003895 showshow history
Names
cpdB ECDH10B_4408
Product
2':3'-cyclic-nucleotide 2'-phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4533007 4534950 1944 648
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006179 (IPR006179 5'-Nucleotidase/apyrase) Jul 2009
Automated Process Approved IPR006294 (IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase) Jul 2009
Automated Process Approved IPR008334 (IPR008334 5'-Nucleotidase, C-terminal) Jul 2009
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Jul 2009
Automated Process Approved IPR006146 (IPR006146 5'-Nucleotidase, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cpdB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013782
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4408 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2':3'-cyclic-nucleotide 2'-phosphodiesterase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006179 5'-Nucleotidase/apyrase Protein Sequence Similarity - InterPro Domain: IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Protein Sequence Similarity - InterPro Domain: IPR006294
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008334 5'-Nucleotidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008334
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006146 5'-Nucleotidase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013782 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013782
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006294
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001559 cpdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001723 cpdB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014806 cpdB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003048 cpdB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001045 cpdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007001 cpdB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004519 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006740 cpdB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004363 cpdB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009915 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006087 cpdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007486 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081525 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008359 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007296 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004846 cpdB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009220 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009055 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007569 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009254 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009202 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010560 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006713 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008373 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006731 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005924 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006067 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005538 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005194 cpdB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029394 cpdB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005747 cpdB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009155 cpdB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013782 cpdB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004305 cpdB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004623 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004684 cpdB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135308 cpdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001232 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004831 cpdB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063916 cpdB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002098 cpdB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000929 cpdB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004040 cpdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008841 cpdB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003382 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005047 cpdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009040 cpdB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013814 cpdB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013060 cpdB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007040 cpdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009175 cpdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007746 cpdB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004148 cpdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007125 cpdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008227 cpdB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009111 cpdB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006269 cpdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004255 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004217 cpdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005566 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004461 cpdB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006611 cpdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008733 cpdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004062 cpdB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114957 cpdB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086182 cpdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103546 cpdB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004736 cpdB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007453 cpdB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005520 cpdB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004608 cpdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006599 cpdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004952 cpdB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075870 cpdB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090482 cpdB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004542 cpdB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004775 cpdB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000968 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001243 cpdB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002101 cpdB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002581 cpdB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002422 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235476 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008080 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000102 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008088 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003708 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127212 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007832 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008529 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001312 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006793 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004085 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030283 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006489 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003939 cpdB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004303 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007448 cpdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007654 cpdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000481 cpdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000558 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004481 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4528007 to 4539950
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003890cycACDSforward45282494529661Downstream
AEC-0003891ytfECDScomplement45297064530368Downstream
AEC-0003892ytfFCDScomplement45304764531441Downstream
AEC-0003893ytfGCDScomplement45315494532409Downstream
AEC-0003894ytfHCDSforward45324984532878Downstream
AEC-0003895cpdBCDScomplement45330074534950Matches
AEC-0003896ytfICDSforward45360924537030Upstream
AEC-0003897ytfJCDScomplement45370934537647Upstream
AEC-0003898ytfKCDSforward45379724538178Upstream
AEC-0003899ytfLCDScomplement45382574539600Upstream
AEC-0003900msrACDScomplement45399234540561Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948