Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003900 (msrA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003900 showshow history
Names
msrA ECDH10B_4414
Product
methionine sulfoxide reductase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4539923 4540561 639 213
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002569 (IPR002569 Peptide methionine sulphoxide reductase MsrA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name msrA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013804
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4414 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product methionine sulfoxide reductase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002569 Peptide methionine sulphoxide reductase MsrA Protein Sequence Similarity - InterPro Domain: IPR002569
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013804 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013804
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002569
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000734 msrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000880 msrA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014816 msrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000819 msrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001039 msrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006996 msrA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004524 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006735 msrA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004369 msrA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009908 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006082 msrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007491 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081530 msrA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008354 msrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007301 msrA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004851 msrA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009226 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003482 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009061 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007575 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009260 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009196 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010566 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006707 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008379 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006737 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005930 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006073 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005544 msrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005200 msrA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029400 msrA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005742 msrA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009161 msrA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013804 msrA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004311 msrA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004629 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004689 msrA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135314 msrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001239 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004836 msrA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063911 msrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002086 msrA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000927 msrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004035 msrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008847 msrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003376 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005052 msrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009045 msrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013834 msrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013080 msrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007034 msrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009181 msrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007740 msrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004153 msrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007130 msrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008232 msrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009117 msrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006264 msrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004261 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004223 msrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005573 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004467 msrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006605 msrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008738 msrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004067 msrA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114975 msrA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086188 msrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103564 msrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004731 msrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007448 msrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005526 msrA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004602 msrA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010280 msrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006592 msrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005037 msrA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075863 msrA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090477 msrA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004537 msrA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004781 msrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000973 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001264 msrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002106 msrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002577 msrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002417 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235485 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008085 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000095 msrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008083 msrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003703 msrA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127195 msrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007837 msrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008534 msrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001855 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006798 msrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004090 msrA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030288 msrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006494 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003932 msrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004296 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007453 msrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007649 msrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000486 msrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000566 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004474 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4534923 to 4545561
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003895cpdBCDScomplement45330074534950Downstream
AEC-0003896ytfICDSforward45360924537030Downstream
AEC-0003897ytfJCDScomplement45370934537647Downstream
AEC-0003898ytfKCDSforward45379724538178Downstream
AEC-0003899ytfLCDScomplement45382574539600Downstream
AEC-0003900msrACDScomplement45399234540561Matches
AEC-0003901ytfMCDSforward45407674542500Upstream
AEC-0003902ytfNCDSforward45424974546276Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948