Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003907 (ppa) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003907 showshow history
Names
ppa ECDH10B_4421
Product
inorganic pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4547507 4548037 531 177
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008162 (IPR008162 Inorganic pyrophosphatase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006796 phosphate-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004427 inorganic diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ppa Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013824
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4421 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product inorganic pyrophosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008162 Inorganic pyrophosphatase Protein Sequence Similarity - InterPro Domain: IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013824 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013824
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006796 phosphate-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004427 inorganic diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000226 ppa CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000263 ppa CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014821 ppa CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003040 ppa CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001034 ppa CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006990 ppa CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004528 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006729 ppa CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004373 ppa CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009902 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006076 ppa CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007497 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081536 ppa CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008348 ppa CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007308 ppa CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004855 ppa CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009232 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003488 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009068 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007582 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009267 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009189 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010573 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006700 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008386 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006744 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005937 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006080 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005551 ppa CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005207 ppa CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029407 ppa CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005737 ppa CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009167 ppa CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013824 ppa CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004318 ppa CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004635 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004696 ppa CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135321 ppa CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001245 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004840 ppa CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063907 ppa CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002115 ppa CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000926 ppa CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004031 ppa CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008854 ppa CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003369 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005058 ppa CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009052 ppa CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013854 ppa CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013099 ppa CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007027 ppa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009188 ppa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007733 ppa CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004160 ppa CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007137 ppa CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008239 ppa CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009124 ppa CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006257 ppa CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004267 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004229 ppa CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005580 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004474 ppa CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006598 ppa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008745 ppa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004074 ppa CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114985 ppa CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086194 ppa CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103578 ppa CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004724 ppa CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007441 ppa CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005533 ppa CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004596 ppa CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010275 ppa CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006583 ppa CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005043 ppa CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075858 ppa CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090473 ppa CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004533 ppa CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004785 ppa CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000977 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001273 ppa CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002110 ppa CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002573 ppa CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001831 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235491 ppa CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008089 ppa CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000089 ppa CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008079 ppa CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003699 ppa CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127188 ppa CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007841 ppa CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008538 ppa CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002414 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006802 ppa CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004094 ppa CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030293 ppa CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006498 ppa CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003926 ppa CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004290 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007457 ppa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007645 ppa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000490 ppa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000572 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004468 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4542507 to 4553037
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003902ytfNCDSforward45424974546276Downstream
AEC-0003903ytfPCDSforward45462794546620Downstream
AEC-0003904yzfACDScomplement45463614546630Downstream
AEC-0003905chpSCDSforward45468324547083Downstream
AEC-0003906chpBCDSforward45470774547427Downstream
AEC-0003907ppaCDScomplement45475074548037Matches
AEC-0003908ytfQCDSforward45483474549303Upstream
AEC-0004043ytfRCDSforward45494434550945Upstream
AEC-0000056IS150.3repeat_regionforward45510894552531Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948