Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003911 (mpl) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003911 showshow history
Names
mpl ECDH10B_4428
Product
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4555616 4556989 1374 458
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005757 (IPR005757 Murein peptide ligase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Jul 2009
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Jul 2009
Automated Process Approved IPR000713 (IPR000713 Mur ligase, N-terminal catalytic domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0007047 (DEPRECATED) cellular cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mpl Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013847
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4428 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005757 Murein peptide ligase Protein Sequence Similarity - InterPro Domain: IPR005757
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000713 Mur ligase, N-terminal catalytic domain Protein Sequence Similarity - InterPro Domain: IPR000713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013847 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013847
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0007047 (DEPRECATED) cellular cell wall organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005757
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000837 mpl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000869 mpl CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015202 mpl CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003037 mpl CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001025 mpl CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006983 mpl CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004534 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006721 mpl CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004379 mpl CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009894 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006068 mpl CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007504 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081544 mpl CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008340 mpl CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007316 mpl CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004861 mpl CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009240 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009076 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007590 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009276 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009179 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010582 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006691 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008394 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006753 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005946 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006087 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005559 mpl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005214 mpl CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029413 mpl CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005730 mpl CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009174 mpl CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013847 mpl CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004324 mpl CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004642 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004703 mpl CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135327 mpl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001253 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004846 yjfG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064244 mpl CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003267 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004239 mpl CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003823 mpl CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008856 mpl CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003365 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005060 mpl CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009055 mpl CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013860 mpl CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013105 mpl CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007025 mpl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009190 mpl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007731 mpl CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004162 mpl CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007140 mpl CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008242 mpl CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009126 mpl CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006255 mpl CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005583 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004476 mpl CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006595 mpl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008748 mpl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004076 mpl CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114991 mpl CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086196 mpl CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103585 mpl CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004722 mpl CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007439 mpl CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005536 mpl CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004590 yjfG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010268 mpl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006575 mpl CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004795 yjfG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075849 mpl CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090466 yjfG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004525 yjfG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004791 mpl CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000980 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001284 mpl CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002113 mpl CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002571 mpl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001834 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235495 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008091 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000086 mpl CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008077 mpl CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003697 mpl CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127183 mpl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007843 mpl CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008540 mpl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002416 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006804 mpl CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004096 mpl CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030295 mpl CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006500 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003923 mpl CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004287 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007459 mpl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007643 mpl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000492 mpl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000574 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004465 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4550616 to 4561989
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004043ytfRCDSforward45494434550945Upstream
AEC-0000056IS150.3repeat_regionforward45510894552531Upstream
AEC-0003909yjfFCDSforward45534144554409Upstream
AEC-0003910fbpCDScomplement45544424555440Upstream
AEC-0003911mplCDSforward45556164556989Matches
AEC-0003912yjgACDScomplement45571454557696Downstream
AEC-0003913pmbACDSforward45577904559142Downstream
AEC-0003914cybCpseudogeneforward45593844559686Downstream
AEC-0003915nrdGCDScomplement45597314560195Downstream
AEC-0003916nrdDCDScomplement45603534562491Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948