Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003915 (nrdG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003915 showshow history
Names
nrdG ECDH10B_4432
Product
anaerobic ribonucleotide reductase activating protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4559731 4560195 465 155
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012837 (IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic) Jul 2009
Automated Process Approved IPR001989 (IPR001989 Radical-activating enzyme, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013860
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4432 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product anaerobic ribonucleotide reductase activating protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic Protein Sequence Similarity - InterPro Domain: IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001989 Radical-activating enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013860 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013860
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001186 nrdG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001447 nrdG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016554 nrdG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000393 nrdG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001020 nrdG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006979 nrdG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004538 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006717 nrdG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004383 nrdG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009889 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006064 nrdG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007508 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081549 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008335 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007320 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004865 nrdG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009244 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003502 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009080 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007594 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009280 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009175 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010586 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006687 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008398 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006757 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005950 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006091 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005563 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005218 nrdG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029417 nrdG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005726 nrdG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009178 nrdG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013860 nrdG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004328 nrdG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004646 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004709 nrdG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135331 nrdG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001257 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004850 nrdG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060592 nrdG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000261 nrdG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000129 nrdG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001951 nrdG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008893 nrdG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003356 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005078 nrdG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009070 nrdG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013901 nrdG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013146 nrdG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006988 nrdG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009206 nrdG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007715 nrdG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004178 nrdG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007155 nrdG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008257 nrdG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009142 nrdG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006239 nrdG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004284 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004246 nrdG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005626 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004512 nrdG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006558 nrdG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008764 nrdG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004092 nrdG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115011 nrdG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086211 nrdG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103677 nrdG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004686 nrdG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007401 nrdG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005573 nrdG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004586 nrdG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010264 nrdG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006571 nrdG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004800 nrdG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075843 nrdG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090462 nrdG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004521 nrdG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004795 nrdG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003278 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001497 nrdG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002176 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001597 nrdG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001889 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235615 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008160 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003541 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008412 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003905 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126981 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006340 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005827 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005816 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004168 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030365 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006570 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000781 nrdG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003908 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004993 nrdG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007576 nrdG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000556 nrdG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000648 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004381 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4554731 to 4565195
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003910fbpCDScomplement45544424555440Downstream
AEC-0003911mplCDSforward45556164556989Downstream
AEC-0003912yjgACDScomplement45571454557696Downstream
AEC-0003913pmbACDSforward45577904559142Downstream
AEC-0003914cybCpseudogeneforward45593844559686Downstream
AEC-0003915nrdGCDScomplement45597314560195Matches
AEC-0003916nrdDCDScomplement45603534562491Upstream
AEC-0003917treCCDScomplement45628854564540Upstream
AEC-0003918treBCDScomplement45645904566011Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948