Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003916 (nrdD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003916 showshow history
Names
nrdD ECDH10B_4433
Product
anaerobic ribonucleoside-triphosphate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4560353 4562491 2139 713
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005144 (IPR005144 ATP-cone domain) Jul 2009
Automated Process Approved IPR001150 (IPR001150 Glycine radical domain) Jul 2009
Automated Process Approved IPR012833 (IPR012833 Ribonucleoside-triphosphate reductase, anaerobic) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012833
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008998 ribonucleoside-triphosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012833
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013865
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4433 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product anaerobic ribonucleoside-triphosphate reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR005144 ATP-cone domain Protein Sequence Similarity - InterPro Domain: IPR005144
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR012833 Ribonucleoside-triphosphate reductase, anaerobic Protein Sequence Similarity - InterPro Domain: IPR012833
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001150 Glycine radical domain Protein Sequence Similarity - InterPro Domain: IPR001150
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013865 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013865
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012833
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008998 ribonucleoside-triphosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012833
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001076 nrdD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001135 nrdD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016556 nrdD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000394 nrdD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001019 nrdD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006978 nrdD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004539 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006716 nrdD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004384 nrdD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009888 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006063 nrdD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007509 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081550 nrdD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008334 nrdD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007321 nrdD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004866 nrdD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009246 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003503 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009082 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007596 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009282 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009173 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010588 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006685 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008400 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006759 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005952 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006092 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005565 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005220 nrdD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029418 nrdD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005725 nrdD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009180 nrdD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013865 nrdD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004329 nrdD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004647 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004710 nrdD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135332 nrdD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001258 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004851 nrdD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060593 nrdD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000259 nrdD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002415 nrdD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001952 nrdD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008894 nrdD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003355 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005080 nrdD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009071 nrdD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013903 nrdD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013148 nrdD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006987 nrdD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009207 nrdD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007714 nrdD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004179 nrdD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007156 nrdD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008258 nrdD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009143 nrdD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006238 nrdD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004285 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004247 nrdD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005628 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004513 nrdD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006557 nrdD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008765 nrdD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004093 nrdD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115014 nrdD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086212 nrdD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103680 nrdD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004685 nrdD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007400 nrdD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005574 nrdD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004585 nrdD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010263 nrdD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006570 nrdD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004801 nrdD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075841 nrdD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090461 nrdD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004520 nrdD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004796 nrdD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003277 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001498 nrdD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002177 nrdD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001596 nrdD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001890 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235617 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008161 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003540 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008413 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003906 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126978 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006341 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005828 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001397 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005817 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004169 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030366 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006571 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000782 nrdD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003907 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004994 nrdD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007575 nrdD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000557 nrdD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000649 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004380 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4555353 to 4567491
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003910fbpCDScomplement45544424555440Downstream
AEC-0003911mplCDSforward45556164556989Downstream
AEC-0003912yjgACDScomplement45571454557696Downstream
AEC-0003913pmbACDSforward45577904559142Downstream
AEC-0003914cybCpseudogeneforward45593844559686Downstream
AEC-0003915nrdGCDScomplement45597314560195Downstream
AEC-0003916nrdDCDScomplement45603534562491Matches
AEC-0003917treCCDScomplement45628854564540Upstream
AEC-0003918treBCDScomplement45645904566011Upstream
AEC-0003919treRCDScomplement45661304567077Upstream
AEC-0003920mgtACDSforward45674564570152Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948