Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003917 (treC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003917 showshow history
Names
treC ECDH10B_4434
Product
trehalose-6-P hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4562885 4564540 1656 552
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Jul 2009
Automated Process Approved IPR012769 (IPR012769 Trehalose-6-phosphate hydrolase) Jul 2009
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Jul 2009
Automated Process Approved IPR013780 (IPR013780 Glycosyl hydrolase, all-beta) Jul 2009
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Jul 2009
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005993 trehalose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008788 alpha,alpha-phosphotrehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name treC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013870
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4434 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product trehalose-6-P hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012769 Trehalose-6-phosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013780 Glycosyl hydrolase, all-beta Protein Sequence Similarity - InterPro Domain: IPR013780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013870 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013870
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005993 trehalose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008788 alpha,alpha-phosphotrehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001916 treC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001813 treC CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001714 palI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001018 treC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006976 treC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006714 treC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004385 treC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009887 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006062 treC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007511 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081551 treC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008331 treC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007323 treC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004867 treC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009248 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003504 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009084 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007597 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009284 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009171 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010591 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006684 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008403 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006760 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005954 treC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006094 treC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005567 treC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005223 treC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029419 treC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005723 treC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009181 treC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013870 treC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004330 treC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004648 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004712 treC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135333 treC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001259 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004852 treC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063299 treC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001742 treC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003951 treC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000256 treC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008896 treC CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005082 treC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009073 treC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013908 treC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006985 treC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009209 treC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007712 treC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004181 treC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007158 treC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008260 treC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009145 treC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006236 treC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004287 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004249 treC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005630 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004515 treC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006555 treC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008767 treC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004095 treC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115018 treC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086214 treC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103683 treC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004683 treC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007398 treC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005576 treC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004584 treC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010261 treC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006569 treC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004802 treC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075840 treC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090460 treC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004519 treC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004797 treC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010837 olgH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002751 treA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001399 treA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003724 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243534 treC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005272 treC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004425 treC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005750 treC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003770 treC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127700 treC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007768 treC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008679 treC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003436 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006727 treC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008055 treC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029756 treC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006421 treC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004178 treC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000353 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006670 treC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004369 treC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003649 treC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004438 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000574 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4557885 to 4569540
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003913pmbACDSforward45577904559142Downstream
AEC-0003914cybCpseudogeneforward45593844559686Downstream
AEC-0003915nrdGCDScomplement45597314560195Downstream
AEC-0003916nrdDCDScomplement45603534562491Downstream
AEC-0003917treCCDScomplement45628854564540Matches
AEC-0003918treBCDScomplement45645904566011Upstream
AEC-0003919treRCDScomplement45661304567077Upstream
AEC-0003920mgtACDSforward45674564570152Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948