Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003923 (pyrB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003923 showshow history
Names
pyrB ECDH10B_4440
Product
aspartate carbamoyltransferase, catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4571291 4572226 936 312
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006130 (IPR006130 Aspartate/ornithine carbamoyltransferase) Jul 2009
Automated Process Approved IPR002082 (IPR002082 Aspartate carbamoyltransferase) Jul 2009
Automated Process Approved IPR006132 (IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding) Jul 2009
Automated Process Approved IPR006131 (IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004070 aspartate carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pyrB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013892
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4440 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aspartate carbamoyltransferase, catalytic subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006130 Aspartate/ornithine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002082 Aspartate carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR002082
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Protein Sequence Similarity - InterPro Domain: IPR006132
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Protein Sequence Similarity - InterPro Domain: IPR006131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013892 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013892
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004070 aspartate carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002082
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000369 pyrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000483 pyrB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016570 pyrB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000398 pyrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001011 pyrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006970 pyrB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004547 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006708 pyrB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004391 pyrB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009881 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006055 pyrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007517 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081558 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008325 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007330 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004873 pyrB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009255 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003511 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009090 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007603 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009290 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009165 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010597 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006678 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008409 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006766 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005960 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006100 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005573 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005229 pyrB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029426 pyrB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005717 pyrB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009189 pyrB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013892 pyrB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004336 pyrB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004656 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004718 pyrB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135339 pyrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001266 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004860 pyrB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060600 pyrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000268 pyrB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002411 pyrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002792 pyrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008904 pyrB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003345 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005088 pyrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009081 pyrB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013934 pyrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013178 pyrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006978 pyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009217 pyrB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007704 pyrB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004189 pyrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007165 pyrB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008267 pyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009152 pyrB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006229 pyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004294 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004256 pyrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004523 pyrB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006547 pyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008775 pyrB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004103 pyrB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115036 pyrB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086221 pyrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103706 pyrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004675 pyrB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007390 pyrB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005585 pyrB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004578 pyrB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010255 pyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006563 pyrB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004808 pyrB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075833 pyrB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090454 pyrB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004514 pyrB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004803 pyrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002318 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010822 pyrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002744 pyrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001395 pyrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000152 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243517 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005266 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004432 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005756 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003762 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127372 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007774 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008471 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000676 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006736 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008061 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029750 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006430 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004171 pyrB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000360 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006676 pyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004375 pyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003643 pyrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004431 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000581 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4566291 to 4577226
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003919treRCDScomplement45661304567077Downstream
AEC-0003920mgtACDSforward45674564570152Downstream
AEC-0003921yjgFCDScomplement45703584570744Downstream
AEC-0003922pyrICDScomplement45708174571278Downstream
AEC-0003923pyrBCDScomplement45712914572226Matches
AEC-0003924pyrLCDScomplement45722304572364Upstream
AEC-0003925yjgHCDScomplement45726454573040Upstream
AEC-0003926yjgICDScomplement45731714573884Upstream
AEC-0003927yjgJCDSforward45739554574548Upstream
AEC-0003928yjgKCDSforward45746934575145Upstream
AEC-0003929yjgLCDSforward45752684577082Upstream
AEC-0003930argICDScomplement45771384578142Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948