Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003930 (argI) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003930 showshow history
Names
argI ECDH10B_4447
Product
ornithine carbamoyltransferase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4577138 4578142 1005 335
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006130 (IPR006130 Aspartate/ornithine carbamoyltransferase) Jul 2009
Automated Process Approved IPR002292 (IPR002292 Ornithine/putrescine carbamoyltransferase) Jul 2009
Automated Process Approved IPR006132 (IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding) Jul 2009
Automated Process Approved IPR006131 (IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009348 ornithine carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004585 ornithine carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4447 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ornithine carbamoyltransferase 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006130 Aspartate/ornithine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002292 Ornithine/putrescine carbamoyltransferase Protein Sequence Similarity - InterPro Domain: IPR002292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Protein Sequence Similarity - InterPro Domain: IPR006132
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Protein Sequence Similarity - InterPro Domain: IPR006131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013927 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009348 ornithine carbamoyltransferase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016743 carboxyl- or carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004585 ornithine carbamoyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000336 argF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000345 argF CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001008 argF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006962 argF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004550 pseudogene
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006699 argF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004398 argI CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009874 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006047 argF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007524 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081567 argI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008317 argF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007337 argF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004880 argI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009262 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003518 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009097 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007610 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009298 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009158 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010605 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006671 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008417 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006774 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005968 argF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006109 argF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005581 argF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005237 argF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029436 argI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005709 argI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009198 argF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013927 argI CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004343 argI CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004664 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004726 argF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135348 argI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001273 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004869 argI CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060602 argI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004241 argI CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002409 argI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002797 argI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008914 argF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003334 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005097 argI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009092 argF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013957 argI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013201 argI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006967 argF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009226 argF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007694 argF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004200 argF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007174 argF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008277 argF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009162 argF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006219 argF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004302 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004264 argI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005651 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004534 argF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006536 argF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008785 argF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004113 argF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115050 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086229 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103735 argI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004665 argF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007380 argF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005595 argF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004564 argI CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010246 argF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006556 argF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004823 argI CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075821 argI CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090445 argI CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004505 argI CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004815 argI CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235636 argI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008168 argF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003529 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008421 argF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003912 argI CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126947 argI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006348 argF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005835 argF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001389 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005824 argF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004176 argF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030373 argI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006578 argF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000793 argI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003896 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005001 argF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007568 argF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000564 argI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000659 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004370 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4572138 to 4583142
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003923pyrBCDScomplement45712914572226Downstream
AEC-0003924pyrLCDScomplement45722304572364Downstream
AEC-0003925yjgHCDScomplement45726454573040Downstream
AEC-0003926yjgICDScomplement45731714573884Downstream
AEC-0003927yjgJCDSforward45739554574548Downstream
AEC-0003928yjgKCDSforward45746934575145Downstream
AEC-0003929yjgLCDSforward45752684577082Downstream
AEC-0003930argICDScomplement45771384578142Matches
AEC-0003931rraBCDSforward45783044578720Upstream
AEC-0003932yjgMCDScomplement45788654579368Upstream
AEC-0003933yjgNCDSforward45795614580757Upstream
AEC-0003934valSCDScomplement45808134583668Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948