Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003934 (valS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003934 showshow history
Names
valS ECDH10B_4451
Product
valyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4580813 4583668 2856 952
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002303 (IPR002303 Valine-tRNA ligase) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Automated Process Approved IPR002300 (IPR002300 Aminoacyl-tRNA synthetase, class Ia) Jul 2009
Automated Process Approved IPR013155 (IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding) Jul 2009
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Jul 2009
Automated Process Approved IPR009008 (IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain) Jul 2009
Automated Process Approved IPR010978 (IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006438 valyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004832 valine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name valS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013946
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4451 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product valyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002300 Aminoacyl-tRNA synthetase, class Ia Protein Sequence Similarity - InterPro Domain: IPR002300
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002303 Valine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR013155
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Protein Sequence Similarity - InterPro Domain: IPR010978
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Protein Sequence Similarity - InterPro Domain: IPR009008
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013946 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013946
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006438 valyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004832 valine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000147 valS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000189 valS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016588 valS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000403 valS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001004 valS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006957 valS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004559 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006694 valS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004402 valS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009870 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006043 valS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007528 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081572 valS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008313 valS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007341 valS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004884 valS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009266 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003522 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009101 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007614 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009302 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009154 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010609 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006667 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008421 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006778 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005972 valS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006113 valS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005585 valS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005241 valS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029440 valS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009202 valS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013946 valS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004347 valS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004668 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004730 valS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135352 valS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001277 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004873 valS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060620 valS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000265 valS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002810 valS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008921 valS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003322 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005105 valS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009099 valS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013973 valS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013216 valS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006961 valS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009234 valS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007686 valS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004207 valS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007181 valS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008285 valS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009169 valS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006212 valS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004309 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004271 valS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005658 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004541 valS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006529 valS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008792 valS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004120 valS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115061 valS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086236 valS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103753 valS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004658 valS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007373 valS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005602 valS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004556 valS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010240 valS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006552 valS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004831 valS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075817 valS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090441 valS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004501 valS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004825 valS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002752 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001538 valS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002189 valS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001583 valS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002822 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235642 valS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008171 valS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003525 valS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008426 valS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003915 valS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126940 valS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006351 valS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005839 valS CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005828 valS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004179 valS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030376 valS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006582 valS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000796 valS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003893 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005004 valS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007564 valS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000567 valS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000662 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004367 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4575813 to 4588668
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003929yjgLCDSforward45752684577082Downstream
AEC-0003930argICDScomplement45771384578142Downstream
AEC-0003931rraBCDSforward45783044578720Downstream
AEC-0003932yjgMCDScomplement45788654579368Downstream
AEC-0003933yjgNCDSforward45795614580757Downstream
AEC-0003934valSCDScomplement45808134583668Matches
AEC-0003935holCCDScomplement45836684584111Overlaps Upstream
AEC-0003936pepACDScomplement45842714585782Upstream
AEC-0003937yjgPCDSforward45860494587149Upstream
AEC-0003938yjgQCDSforward45871494588231Upstream
AEC-0003939yjgRCDScomplement45883924589894Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948