Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003941 (idnT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003941 showshow history
Names
idnT ECDH10B_4458
Product
L-idonate and D-gluconate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4591037 4592356 1320 440
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003474 (IPR003474 Gluconate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name idnT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013969
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4458 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-idonate and D-gluconate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003474 Gluconate transporter Protein Sequence Similarity - InterPro Domain: IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013969 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013969
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004554 idnT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004909 idnT CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004566 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004409 idnT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009141 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081580 idnT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009209 idnT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013969 idnT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004354 idnT CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004738 idnT CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004881 idnT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008927 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005114 idnT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009105 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013994 idnT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013236 idnT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006955 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009240 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007680 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007188 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008291 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009175 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006206 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004315 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004277 idnT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005664 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004547 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006521 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008798 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004126 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103770 idnT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004652 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007367 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005608 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004832 idnT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4586037 to 4597356
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003937yjgPCDSforward45860494587149Downstream
AEC-0003938yjgQCDSforward45871494588231Downstream
AEC-0003939yjgRCDScomplement45883924589894Downstream
AEC-0003940idnRCDScomplement45899724590970Downstream
AEC-0003941idnTCDScomplement45910374592356Matches
AEC-0003942idnOCDScomplement45924184593182Upstream
AEC-0003943idnDCDScomplement45932064594237Upstream
AEC-0003944idnKCDSforward45944544595017Upstream
AEC-0003945yjgBCDScomplement45950214596040Upstream
AEC-0004192leuXtRNAforward45962364596320Upstream
AEC-0004562KpLE2prophageforward45963714636440Upstream
AEC-0003946intBCDSforward45965814597771Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948