Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003942 (idnO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003942 showshow history
Names
idnO ECDH10B_4459
Product
5-keto-D-gluconate-5-reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4592418 4593182 765 255
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Jul 2009
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name idnO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013971
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4459 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 5-keto-D-gluconate-5-reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013971 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013971
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003108 idnO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002895 idnO CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002995 idnO CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004567 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004410 idnO CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009142 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081581 idnO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005693 gno CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009210 idnO CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013971 idnO CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004355 idnO CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004739 idnO CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004882 idnO CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003091 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002378 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008928 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005116 idnO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009106 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013997 idnO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013239 idnO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006954 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009241 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007679 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004214 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007189 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008292 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009176 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006205 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004316 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004278 idnO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005665 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004548 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006520 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008799 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004127 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103773 idnO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004651 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007366 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005609 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004833 idnO CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002164 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004091 idnO CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000611 gno CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003538 idnO CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002540 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239901 idnO CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005914 idnO CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002453 idnO CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007915 idnO CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000928 idnO CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123739 idnO CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004688 idnO CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005586 idnO CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001300 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006906 idnO CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005480 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031334 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008221 idnO CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002571 idnO CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002338 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005786 idnO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005436 idnO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002659 idnO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003182 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001852 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4587418 to 4598182
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003938yjgQCDSforward45871494588231Downstream
AEC-0003939yjgRCDScomplement45883924589894Downstream
AEC-0003940idnRCDScomplement45899724590970Downstream
AEC-0003941idnTCDScomplement45910374592356Downstream
AEC-0003942idnOCDScomplement45924184593182Matches
AEC-0003943idnDCDScomplement45932064594237Upstream
AEC-0003944idnKCDSforward45944544595017Upstream
AEC-0003945yjgBCDScomplement45950214596040Upstream
AEC-0004192leuXtRNAforward45962364596320Upstream
AEC-0004562KpLE2prophageforward45963714636440Upstream
AEC-0003946intBCDSforward45965814597771Upstream
AEC-0000057IS2.11repeat_regionforward45980124599342Upstream
AEC-0003947insC-6CDSforward45980584598468Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948